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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacag

Basic information

species Zea mays
transcript GRMZM2G470499_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470499_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g54700.1 (Oryza sativa), 5'ss of exon 6
CGACGTCTTCTCCTTCGGTGTGATGCTGCTGGAGCTCATCACCGGGAGGAAACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtccttctttggacccaatccttcttgcctaaattagttcccatccatcagttaactatgactgtgctaagtatcggtactggttggttataagctgttacatactttacataatagcatcacgtggattccccattcgatatgcaacagcgacagttcctctgctcctcaacag
|||||||||||| ||||| |||||||| |||||||| |||||||||| ||| || |||||||  |||   |     ||| |||   |||||||||||||||||||||| | | |    | |   | ||     |   |  |   || ||||    ||     |  |||  ||  | | | || ||    ||     |                                                                                     
CGACGTCTTCTCATTCGGCGTGATGCTCCTGGAGCTGATCACCGGGAAGAAGCCTATCATGGTGTCTCACGGTGACCAGCCTGACACATTGGTTTCTTGGgtgagtgggcttccg--agtcttgaacc-----gaacacgtagatttccatttgcca-cggccggtgaaagtagtca-tctctgtgtgtgtccaacag------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|101381709|gb|EB812912.1|EB812912
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148995866|gb|EE035102.2|EE035102
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71436076|gb|DR817126.1|DR817126
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|149104235|gb|EE289671.2|EE289671
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|89249349|gb|DY621135.1|DY621135
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|94477995|gb|EB706953.1|EB706953
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|88750189|gb|DY534330.1|DY534330
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|37422946|gb|CF649190.1|CF649190
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71771807|gb|DR969744.1|DR969744
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|76914139|gb|DV165421.1|DV165421
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|110215668|gb|EC897566.1|EC897566
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148952461|gb|EC898287.2|EC898287
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71316884|gb|DR795129.1|DR795129
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148963688|gb|EE014752.2|EE014752
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148987250|gb|EE031085.2|EE031085
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|94474665|gb|EB703623.1|EB703623
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|78087049|gb|DV515442.1|DV515442
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71763339|gb|DR961276.1|DR961276
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|101384403|gb|EB814246.1|EB814246
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|50334733|gb|CO529859.1|CO529859
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|148987251|gb|EE031086.2|EE031086
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGANCA-GAGCTGTGGAGGAGGAAAA
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGA-CAAGAGCTGTGGAGGAGGAAAA
EST: gi|148959211|gb|EC905317.2|EC905317
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|78124341|gb|DV542725.1|DV542725
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
EST: gi|71423642|gb|DR806109.1|DR806109
EST:     AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGG                         GCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC
genomic: AACCAATCATGGCATCTTCAGAGTTTCAGTCTGTGGCATTGGTTTCTTGGgtgagtggtc ... tcctcaacagGCTAGGCCATTGCTGACAAGAGCTGTGGAGGAGGAAAACTACGACGACCTC