Sequence
atgc intronic sequence ATGC exonic sequenceAATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagatgccatgtaactatcttatttgatctttttttcatctacagtcttcactatggaatgcttgcttcttgaaaaaaataaagttatgctaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G470438_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 12
AATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtag-atgccatgtaactatcttatttgatctttttttcatctacagtcttcactat--ggaatgcttgcttcttgaaaaaaataaagttatgctaaaa
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AATTGGCACTGATGCAACGATGCATGATCACATAAAAAAGTTACTTGACCGTTGTTATGCAACCAAAGATGCAAATACACGGTTCTCCCCAACAAATCTAgtatgtttcatcacaactaagt-tttcattagatcattgcatgtagcacaatattcattgtttgcaattatttacatgttagtgttattatgacatggcat--
upper sequence: GRMZM2G470438_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0044g01570.t01 (Vitis vinifera), 5'ss of exon 6
AATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagatgccatgtaactatcttatttgatcttttt---ttcatctacagtcttcactatggaatgcttgcttcttgaaaaaaataaagttatgctaaaa
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CATTGGTACAGATGCAACAATGCATGATCACATAAAAAAGCTGCTGGATCGGTTTTATGCAACTAAGGACTCAAATACTCGTTTCTCACCAACAAATCTTgtaacttttttggcttcaactat-ttatgaaattagttgaaataaatggatgattgtctagttagttttcctaattcatttgttcattactat-attcggga-
upper sequence: GRMZM2G470438_T04 (Zea mays), 5'ss of exon 5
lower sequence: EFJ13984 (Selaginella moellendorffii), 5'ss of exon 13
AATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagatgccatgtaactatcttatttgatctttttttcatctacagtcttcactatggaatgcttgcttcttgaaaaaaataaagttatgctaaaa
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AATTGGAACGGATGCTACTATGCATGATCACATAAAAAAGCTGCTGGACCGGCGCTACGCTACCAAAGATGCGCAGACACGCTTTTGTCCCACAAACTTGgtacgcgg------cacaaccaggaaaagtg--ctttcaactaagttgagattatcttacag--------------------------------------
upper sequence: GRMZM2G470438_T04 (Zea mays), 5'ss of exon 5
lower sequence: EFJ28114 (Selaginella moellendorffii), 5'ss of exon 13
AATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagatgccatgtaactatcttatttgatctttttttcatctacagtcttcactatggaatgcttgcttcttgaaaaaaataaagttatgctaaaa
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AATTGGAACGGATGCTACTATGCATGATCACATAAAAAAGCTGCTGGACCGGCGCTACGCTACCAAAGATGCGCAGACACGCTTTTGTCCCACAAACTTGgtacgcgg------cacaaccaggaaaagtg--ctttcaactaagtagagattatcttacag--------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|149060846|gb|EE157300.2|EE157300EST: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTT GGTGAGGCATTGGTGATGGGTTATGATGAA
genomic: GTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagat ... aaaaatgtagGGTGAGGCATTGGTGATGGGTTATGATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTGGCACTGATGCAACCATGCATGATCACATAAAAAAGTTGCTTGACCGTTGTTATGCAACCAAAGATGAAAACACACGTTTCTCCCCGACAAATCTTgtatgtagatgccatgtaactatcttatttgatctttttttcatctacagtcttcactatggaatgcttgcttcttgaaaaaaataaagttatgctaaaa
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