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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCCGCGGAACTTCAGGTGAGCTCGTGCTCTTTGTGCGTCGACCTGAAATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatatagttaattcatgccatctgattggggttggtgtttaacaacaatatgactatgtatctgttgtttttcctcccatctccccaacctgaag

Basic information

species Zea mays
transcript GRMZM2G466549_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26456347|gb|CA827930.1|CA827930
EST:     ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAG                         TTCTTTGACGAAATGGATGAAGATGGAA
genomic: ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatat ... caacctgaagTTCTTTGACGAAATGGATGAAGATGGAA
EST: gi|87157376|gb|DY402165.1|DY402165
EST:     ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAG                         TTCTTTGACGAAATGGATGAAGATGGAA
genomic: ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatat ... caacctgaagTTCTTTGACGAAATGGATGAAGATGGAA
EST: gi|22935650|gb|BU571925.1|BU571925
EST:     ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAG                         TTCTTTGACGAAATGGATGAAGATGGAA
genomic: ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatat ... caacctgaagTTCTTTGACGAAATGGATGAAGATGGAA
EST: gi|20507543|gb|BQ279677.1|BQ279677
EST:     ATGGTGCTTGATTACGTTGGAATTCAACCACTTCTATTCAACTCTCTAAG                         TTCTTTGACGAAATGGATGAAGATGGAA
genomic: ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatat ... caacctgaagTTCTTTGACGAAATGGATGAAGATGGAA
EST: gi|26559361|gb|CA831596.1|CA831596
EST:     ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAG                         TTCTTTGACGAAATGGATGAAGATGGAA
genomic: ATGGTGCTTGATTACGGCGGAATTCAACCACTTCTATTCAACTCTCTAAGgtactgatat ... caacctgaagTTCTTTGACGAAATGGATGAAGATGGAA