1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAGAAGGTCATGACAATGCCCAGGAAGCAAACACAGCGTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttcttatatagtttctattcaatcacttcctttttccattgtcacccagtaacatatacttgttgctatgcag
species | Zea mays |
transcript | GRMZM2G461793_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|71330256|gb|DR801876.1|DR801876
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: TGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTNCA-CTAGAAAGG AATATTGAAAATGAATEST: gi|148939429|gb|EC883983.2|EC883983
genomic: TGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCT-CAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAAT
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTEST: gi|33468206|gb|CF245255.1|CF245255
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCT
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|211374387|gb|FK951695.1|FK951695
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|71322070|gb|DR797725.1|DR797725
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATTTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|31355775|gb|CD440132.1|CD440132
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|76932105|gb|DV172945.1|DV172945
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|148946083|gb|EC891379.2|EC891379
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAGAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|211374386|gb|FK951694.1|FK951694
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: TGATCTCCAGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGAWGTTTATGCTGAEST: gi|91872818|gb|EB402775.1|EB402775
genomic: TGATCTCC-GGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGG-TGTTTATGCTGA
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|148953457|gb|EE152960.2|EE152960
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|148987549|gb|EE031414.2|EE031414
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|148987550|gb|EE031415.2|EE031415
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACGAAGGTGTTTATGCTGACEST: gi|94477914|gb|EB706872.1|EB706872
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG GATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|211360103|gb|FL362300.1|FL362300
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: TGATCTCCGGAGAATGGAGAAAAGCTGAA-GGGCTGCTCAACTAGAAAGG GATATTGAAAATGAATTGGAGGGACGCCTTGA-CAAAG-TGGTTATGCTGAEST: gi|60395012|gb|DN227881.1|DN227881
genomic: TGATCTCCGGAGAATGGAGAAA-GCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCT-GAACAAAGGTGTTTATGCTGA
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|71322072|gb|DR797726.1|DR797726
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|31355774|gb|CD440131.1|CD440131
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|148953458|gb|EE152961.2|EE152961
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGACEST: gi|91872817|gb|EB402774.1|EB402774
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
EST: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGG AATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
genomic: GTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttct ... tgctatgcagAATATTGAAAATGAATTGAAGGAACGCCTGAACAAAGGTGTTTATGCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGGTCATGACAATGCCCAGGAAGCAAACACAGCGTGATCTCCGGAGAATGGAGAAAGCTGAAAGGGCTGCTCAACTAGAAAGGgttattttcttatatagtttctattcaatcacttcctttttccattgtcacccagtaacatatacttgttgctatgcag
- - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT