1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GATAAGATCGTGATGACATTTCAATGGATAAAGCTCTAAGTTAGAATCACTACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtccttctgaattattcattgttattgtcatcattataataatgtgaatttgcctgtaagttacttgacataatgcactctattatctttagagga...
species | Zea mays |
transcript | GRMZM2G459642_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG ATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGATEST: gi|60353564|gb|DN220537.1|DN220537
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAGEST: gi|211383655|gb|FL455017.1|FL455017
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: TACTTCTGGCTGTGTTTATTGCAGAGAMCCTGAAGATGTTCCGAACTAAGTTTTGCAGEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|33091264|gb|CF051258.1|CF051258
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG TEST: gi|4827750|gb|AI668442.1|AI668442
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcag-
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAGEST: gi|6539112|gb|AW225251.1|AW225251
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAG ATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGATEST: gi|60401545|gb|DN234352.1|DN234352
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtcctt ... agttttgcagATGCTATGTGAATCATGTAAATTATTGCTTTGGCCAGATGCATGTACAGAT
EST: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGTTTTGCAG
genomic: TACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACT-A-------AGgtatgtcctt ... agt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATAAGATCGTGATGACATTTCAATGGATAAAGCTCTAAGTTAGAATCACTACTTCTGGCTGTGTTTATTGCAGAGAACCTGAAGATGTTCCGAACTAAGgtatgtccttctgaattattcattgttattgtcatcattataataatgtgaatttgcctgtaagttacttgacataatgcactctattatctttagagga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG