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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattacttaatgcaagtaattaattttgtaagcgctaatatgccacacaatttgcaataagcaagatccttttgtctttatatcaatttgaaaacattt...

Basic information

species Zea mays
transcript GRMZM2G458549_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G458549_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g61710.1 (Oryza sativa), 5'ss of exon 5
GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattacttaatgcaagt-aattaattttgtaagcgctaatatgccacacaatttgcaataagcaagatccttttgtctttatatcaatttgaaaacattt-----
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| || ||||||||||  |||  | | | |  |  || |   |   |  ||   |  |||| |  |  |     || ||    |  ||||   | | |||  | | |  | ||     
GATCTGGACTTTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTATCATGGGAGTTCTTGAGAAAAATTTCCCAAAGgtatcccttgctacgaatcgaacaactcccttgccattatctt--cacatagctcccttattgccag----tactgtccacaaaacaaaataatattaattgccta

upper sequence: GRMZM2G458549_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G36610.1 (Glycine max), 5'ss of exon 5
GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattactta-atgcaagtaattaattttgtaagcgctaa----tatgccacacaatttgcaataagcaagatccttttgtctttatatcaatttgaaaacattt
| |||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||      ||||    ||||| || |||||||  |||    || || |   |  | |||  | | ||     | |||    ||| ||    | ||  ||  | ||   |   || ||   |||| | | ||  
GTTCTGGACTATCAAGCTCTGCAGCATTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCGAAGgtatgccttctgggctagaatgcacatgtgtcggtgttatagtttgtgcagagcaaattatgttcagtgag--cgttgaatggataaattg-tttgcatatat--

upper sequence: GRMZM2G458549_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G03990.1 (Glycine max), 5'ss of exon 5
GCTCTGGACTGTCAAGCTCAGCAGCATTTGTCTGTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattacttaatg-caagtaattaattttgtaagcgctaatatgccacacaatttgcaataagcaagatc---cttttgtctttatatcaatttgaaaacattt
| |||||||| |||||||| ||||| |||||||| ||| | ||||||||||| ||||      ||||    ||||| |||||||||   |||   | |  | ||  | |  |||  | | |||||       |  | || |  ||      |    || ||| ||    ||  | | || || ||| 
GTTCTGGACTATCAAGCTCTGCAGCGTTTGTCTGCTCATCCACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGgtacgccttttggactggcaagcactagtgtgtgtg-taatagtttgtgctttgtggagcaaattctgttaagctcttg-ctgagcattgaatggataa-att-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32806294|gb|CD958528.1|CD958528
EST:     GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAG                         AAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA
genomic: GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattactta ... aaccgtgcagAAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA
EST: gi|74244484|gb|DT652398.1|DT652398
EST:     GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAG                         AAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA
genomic: GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattactta ... aaccgtgcagAAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA
EST: gi|108824283|gb|EC278291.1|EC278291
EST:     GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAG                         AAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA
genomic: GTTCAGCAACAATTGCTATCATGGGAATCCTTGACAAAAACTTTCCAAAGgtattactta ... aaccgtgcagAAAGAAGTTGCTCAATTCACTTGTCTGTCTGAGCGCCACATTGGAACGCAA