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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctactaaactgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt...

Basic information

species Zea mays
transcript GRMZM2G456000_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g51630.2 (Oryza sativa), 5'ss of exon 4
CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgta-cttctactaaa---ctgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt--
 ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||||||||||  ||||||||||   | |  ||||    || ||||||| |  |||||||  || | || | ||  || || | ||   | | |  | |   ||  | ||||   |||| ||    
TCTTGTGCGGAATATACCTCCAGATCCTGATGAATCAATTAGTGAGCTCGTGGAGCATTTCTTCCTTGTTAATCATCCTGATCATTATCTAAGACACCAGgtaatctttggtaaaaatttgtggataactaagtcagatg--tagttctgt-tgcttttctcttctgggggtttcaacaggtca--tcatctgc-ttaggtaggag

upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 5
CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctactaaactgcggataaccatctcagatggttaatact--ctctgtgttgctatgcttttgctctttataatgcagttgatctttattaga-tatt---
 |||||  | ||| ||||||| ||||||||||||||  |||||||||| ||||||||||||||  | ||||||||||| ||||| |||||    || ||||| ||  | ||    | | | | || |   || |||  |||| ||   ||| |||| |   |||| |  | |   |  || | ||    | ||| | | ||||   
ACTTGTTAGAAATGTACCACCTGATCCTGATGAATCGGTCAGTGAGCTAGTGGAACATTTCTTTTTGGTCAATCATCCAGATCACTATCTCACTCAGCAGgt-ctgatcct----ttctggttacaagtacacatgcctaattctgtttctctgtttcagagcttgtaatatg-gttttgtaatttgagtgtatcaaaatattaat

upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G01400.1 (Glycine max), 5'ss of exon 4
CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgt-acttctactaaactgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt
 || ||  | || || ||||||||||||||||| ||  |||||||||||||||| || || || || ||||||||||| ||| | |||||    ||||||||   ||| ||     | |   ||  |  ||   ||| |   | |  |   | |  |  |  || |  | || | |||  |     | ||   | | |  |
GCTCGTTAGAAACATTCCACCAGATCCTGATGAGTCTGTCAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAATCATCCAGATAACTATCTTTCTCACCAGgttggttccacctgtgtacac-tatgctgctagaatgttctgttcattaattatctcatttattcttatattaagaattaaagaagtgttgggtggtttct

upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G39320.1 (Glycine max), 5'ss of exon 5
CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgt-acttctactaaactgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt-
 || ||  | || || ||||||||||||||||||||  | |||||||||||||| || || || || ||||| ||||| ||| | |||||    ||||||||   ||| ||     | ||  ||  |  ||  |||| |   | |  |   | |  |  |  ||||| | || | |||  |     | ||   | | |  | 
GCTCGTTAGAAACATTCCACCAGATCCTGATGAATCTGTAAGTGAGCTTGTGGAGCACTTTTTTCTGGTCAACCATCCAGATAACTATCTTACTCACCAGgttggttccacctgtgtacgc-tatgctgctaggatgttctgt-cattaattatctcatttattttgatattaagaatttaagaagtgttgggtggtttcta

upper sequence: GRMZM2G456000_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT4G15430.1 (Arabidopsis thaliana), 5'ss of exon 5
CCTTGTGCGGAATATACCACCAGATCCTGATGAATCAATCAGTGAGCTTGTGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctactaaactgcggataaccatctcagatggttaatactctctgtgttgctatgcttttgctctttataatgcagttgatctttattagatatt
 || ||  | || || ||  |||||||| ||||||||||  |||| ||||| ||||||||||||   ||||||||||| ||||| |||||      |||||||    || | | ||  ||||       |   || ||  | | ||||||  |||  ||   |  | |  | ||  |  |  || | || | |       
ACTGGTAAGAAACATTCCTGCAGATCCTCATGAATCAATATGTGAACTTGTTGAACATTTCTTCAAAGTCAATCATCCAGATCACTATCTCACTTTCCAGgta----taatcatctttggat------tttctattgtataca-tctctgacttg--atttctgagttgatgatggttgatctgcttttaactcag----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78105551|gb|DV523969.1|DV523969
EST:     TGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAG                         GTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAG
genomic: TGGAACATTTCTTCCTTGTCAATCATCCTGATCATTATCTACAACACCAGgtacttctac ... tgctatttagGTGGTTTACAACGCAAATAAACTTGCTGATCTGGTTGAAAAGAAGAAGAAG