1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGTTCGAGGGCCGAAACGAAGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGgcacacgtaatttttttttcttcctcctccctacactacacagcagtgtttctgaacggaacaggactgaccgtcgtttcag
species | Zea mays |
transcript | GRMZM2G454928_T06 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAG GACGTATCTGAGGCTTCCATGGAGGCCGCTGGTCGCGATCGGAGGGAGCACEST: gi|71320936|gb|DR797185.1|DR797185
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGgcacacgtaa ... gtcgtttcagGACGTATCTGAGGCTTCCATGGAGGCCGCTGGTCGCGATCGGAGGGAGCAC
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAG GACGTATCTGAGGCTTCCATGGAGGCCGCTGGTCGCGATCGGAGGGAGCACEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGgcacacgtaa ... gtcgtttcagGACGTATCTGAGGCTTCCATGGAGGCCGCTGGTCGCGATCGGAGGGAGCAC
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|110521286|gb|EE025470.1|EE025470
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78109734|gb|DV528150.1|DV528150
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG CEST: gi|78022296|gb|DV490683.1|DV490683
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
EST: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGG C
genomic: AGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAA-Ggcacacgtaa ... gtcgtttcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTCGAGGGCCGAAACGAAGTTCGTCAAGGCGACATGGAAACTAAGGTTCATCTTCAAGCTCCAAAAGgcacacgtaatttttttttcttcctcctccctacactacacagcagtgtttctgaacggaacaggactgaccgtcgtttcag
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