1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttatttgcccttcttttgggaaatgctgccttccaacatacatctcttatgttttttgctgatatatttctgtaaaatgcacag
species | Zea mays |
transcript | GRMZM2G452633_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCAAG-CAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|211489831|gb|FL359783.1|FL359783
genomic: AGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|33092930|gb|CF052924.1|CF052924
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|211190617|gb|FL326446.1|FL326446
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAKAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|211322617|gb|FL345965.1|FL345965
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|32934224|gb|CF039036.1|CF039036
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|211526230|gb|FL353915.1|FL353915
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAGEST: gi|60358926|gb|DN225899.1|DN225899
genomic: AGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
EST: ATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAG GAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
genomic: ATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttat ... aaatgcacagGAAACTGAAGAAGCAGAACTCAAAATGCTGAGAAAGAGTTTGAATTTCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTATTCGAAGCTTGAGGAGAAGATTCATGCAAGAGAGTTAGAAATAAGCAATTTGCAAGCCAAGTCAAAGgtacccttatttgcccttcttttgggaaatgctgccttccaacatacatctcttatgttttttgctgatatatttctgtaaaatgcacag
- - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGCAA