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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTTGAGAGAGCTTTCCGGGAGAAATTCCCTGCATGCTCAATTTCTGCCAAAAGACATATAGATACTACAACGACGATATTGGATGTCCACGGTGTGgtatgttcattgtctaaattgttttgttaactccattacttatcttgattcttgaaagagatacacacaataaaattaaagagaagagcactcactgctt...

Basic information

species Zea mays
transcript GRMZM2G452580_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g48990.1 (Oryza sativa), 5'ss of exon 5
AGAGTTTGAGAGAGCTTTCCGGGAGAAATTCCCTGCATGCTCAATTTCTGCCAAAAGACATATAGATACTACAACGACGATATTGGATGTCCACGGTGTGgtatgttca-ttgtctaa-attgttttgttaactccattacttatct-tgattcttgaaagagatacacacaataaaattaaagagaagagcactcactgctt
 || ||||||||||| ||||| ||||| || ||||||||||||||| |||| ||||  ||||| ||||| ||||| || ||| |||||||||||||||||||||||||| ||||| |        |   ||  ||   | |||        || |  ||  | ||  ||| || || || |     |     |   |||    
GGAATTTGAGAGAGCATTCCGAGAGAAGTTTCCTGCATGCTCAATTGCTGCTAAAAAGCATATTGATACGACAACTACAATACTGGATGTCCACGGTGTGgtatgttcaattgtccatcgccacctaactatgtcttcttcttgctagcagttgtctaataaaattgaca-aagaatatcagtcctacattaagatacttt--

upper sequence: GRMZM2G452580_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT1G55690.3 (Arabidopsis thaliana), 5'ss of exon 6
AGAGTTTGAGAGAGCTTTCCGGGAGAAATTCCCTGCATGCTCAATTTCTGCCAAAAGACATATAGATACTACAACGACGATATTGGATGTCCACGGTGTGgta--tgttcattgtctaaattgttttgttaactccattac-ttatcttgattcttgaaagaga-tacacacaataaaattaaagagaagagcactcactgctt----------------
|||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||  | |  ||   | | ||||| || ||| ||||||| || ||  |||||  | || |   ||| |      ||   ||     || | || | ||      ||||  |||     |||  | |        |||     |         |                
AGAGTTTGAGAGAGCTCTCCAGGAGAAATTCCCTGCATGCTCAATTGCTGCAAAGCGTCGAATCTGTTCCACAACTACAATACTGGATGTGCAAGGATTGgtaattatttaagttcttaccaagctttggaatatttttgcattgtgttatgctctgaagcagaacttgcacctttagtgcttctagattcttatctgtgaagtgtcatgttaatgacag