1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTTAAGGAGCAACTTTGGAAGACCTTCCGAAGCGTTGCACTTACTTTCCTTGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttattctgcagtaggatgattctctcttgttcctgattcaggttcagcattgttcaattttgggttatatacag
species | Zea mays |
transcript | GRMZM2G451483_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|76283904|gb|DV023472.1|DV023472
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|148995311|gb|EE034536.2|EE034536
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|71426212|gb|DR807262.1|DR807262
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|149085073|gb|EE174581.2|EE174581
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|148933030|gb|EE285926.2|EE285926
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|71439745|gb|DR820795.1|DR820795
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|74238940|gb|DT646854.1|DT646854
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGTEST: gi|93283938|gb|EB676202.1|EB676202
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
EST: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAG GGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
genomic: TGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttatt ... ttatatacagGGCTTGGATTGAACGAAGAGGTTCGGCCCAACATGGATTCGAAGACAAAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAAGGAGCAACTTTGGAAGACCTTCCGAAGCGTTGCACTTACTTTCCTTGTGATCTCCGGCATTGGAGCTCTCCTTGAAGACAGGGGAATTAGTAAAGgtttgttattctgcagtaggatgattctctcttgttcctgattcaggttcagcattgttcaattttgggttatatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA