1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTGATTGCGATCGTGCTACCCTTGGTTATCTTTGCTGTCATTTACTTCAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAGgtacctgacattctaaacatgttatttgtcaattgacagttttaatttatgttgaacttaaaaaatatgtag
species | Zea mays |
transcript | GRMZM2G447433_T09 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTATGATTTACACCACGGCATACTAG GTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGEST: gi|10697618|gb|BE997342.1|BE997342
genomic: CTATGATTTACACCACGGCATACTAGgtacctgaca ... aaatatgtagGTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGG
EST: CAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAG GTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGGEST: gi|71448322|gb|DR829372.1|DR829372
genomic: CAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAGgtacctgaca ... aaatatgtagGTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGG
EST: CATTTACTTCAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAG GTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGG
genomic: CATTTACTTCAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAGgtacctgaca ... aaatatgtagGTATCTTGTATTCAGTGCTTATAACTGCTGTGATCACTGATGCAATTAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGATTGCGATCGTGCTACCCTTGGTTATCTTTGCTGTCATTTACTTCAAAAAGAAAAATGTCTATGATTTACACCACGGCATACTAGgtacctgacattctaaacatgttatttgtcaattgacagttttaatttatgttgaacttaaaaaatatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA