Sequence
atgc intronic sequence ATGC exonic sequenceGGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttctgctctggtacttcacattttgatttcaaatattgatttaactgtgtgctacacacaatatgtccttaggcatgttattttttccttcattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G447433_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g27040.1 (Oryza sativa), 5'ss of exon 3
----------------------------------------------------------------------GGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttct-gctctggtacttcacattttgatttcaaatattgatttaactgtgtgctacacacaatatgtccttaggcatgttattttttccttcattacag
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AAACATAATTGAGCCTTTTCACCGCTTTGTTGGACGTGACATGATGACAGACTTGAGATATCCACTAAAGGGCAACACAATTCCATTTTGGGCCGTTCCAgtatgttctcgttatgccagataaaatttt---cttatggtttcatctatc-gtttgaggcatgcaattctttctt-gacttgcag------------------
upper sequence: GRMZM2G447433_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g27030.2 (Oryza sativa), 5'ss of exon 2
----------------------------------------------------------------------GGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttct-gctctggtacttcacattttgatttcaaat-attgatttaactgtgtgctacacacaatatgtccttaggcatgttattttttccttcattacag-
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CAACATAATTGAGCCTTTTCACCGCTTCGTTGGAAGTGACATGCTGACAGACTTGAGATATCCACTGAAGGGCAATACAGTTCCATTTTGGGCTGTTCCAgtatgttcttgctttgtgagatttaattttcttataagatcatctattgacttgtctgtggtgcatgacatgtctctgaggaagtttggtttttcttgatttccag
upper sequence: GRMZM2G447433_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA09G18450.2 (Glycine max), 5'ss of exon 2
----------------------------------------------------------------------GGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttctgct-ctggta--cttcacattttgatttcaaatattgatttaactgtgtgctacac--acaat-atgtccttaggcatgttattttttccttcattacag
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GAATGTGATAGAACCATTTCACCGTTTTGTTGGAGAGGGGATGATGTCCGACTTGAGATACCCGTTGAAAGATAATACTATACCCTTTTGGGCTGTTCCAgtatgttctgcttctaacaaactatgcatccttgttgttgagattatgttaatatagacctttattgacattcaagatatgaactcttaaatttcaaattttgggacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211481710|gb|FL151171.1|FL151171EST: GGCAACACAATCCCATTTTGGGCTGTTCCA CTGATTGCGATCGTGCTACCCTTGGTTATCTTTGCTGTCATTTACTTCAAA
genomic: GGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttctg ... ttcattacagCTGATTGCGATCGTGCTACCCTTGGTTATCTTTGCTGTCATTTACTTCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCAACACAATCCCATTTTGGGCTGTTCCAgtatgttctgctctggtacttcacattttgatttcaaatattgatttaactgtgtgctacacacaatatgtccttaggcatgttattttttccttcattacag
- - - - - - - - - - GCTGTT