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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttccccacttaggcctaaccagtttttttctt...

Basic information

species Zea mays
transcript GRMZM2G446189_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os06g07230.1 (Oryza sativa), 5'ss of exon 3
CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttc--cccacttaggcctaac--cagtttttttctt
||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||       | |   |    || |     |    ||  | | | |  |||| || ||  |||     ||  || |  |  |  ||  |||||  ||
CACCTTGTTAAGCTGATTGGATACTGTATCGAGGATGACCAAAGGTTGCTTGTATATGAATTCATGGCCCGGGGAAGTCTTGAAAACCATCTTTTCAGAAgtaagcaatcttt----acaaccatcttttcagaagtaaacaatcaaatacatgcattagtatttctttttaattcaaataagattggcatcacatttttaatt

upper sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA17G12060.1 (Glycine max), 5'ss of exon 3
CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagagttaatgctttaagttgagtagatttagtgcctttattactaatttgtttccccacttaggcctaaccagtttttttctt------
 ||||||| || || ||||| || || ||||| |||||||| ||| | ||||| || || || ||| | || |||||||| ||||||||||| ||||||||| ||      |||  |    ||     | ||  | |      | | |      |||  |||    | ||   |  | |    |     |||| || |        
AACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgcc---ttgcctttctacataggaattgtatgg-attgctatatctag--agattatacggtaacagtttttaggtttcttgcacaagtca

upper sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA13G22790.1 (Glycine max), 5'ss of exon 3
CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagag--ttaatgcttta-agttgagtagatt-tagtgcctttattactaatttgtttccccacttaggcctaaccagtttttttctt
 ||||||| || || ||||| ||||| ||||| ||||||||  || | ||||| || || || ||| | || |||||||| ||||||||||| ||||||||| ||      |||  |   |  ||  | | |   | |||  | |||| |  |  |   |  | ||    ||  |      ||||  |  | || |    ||  
AACCTTGTGAAACTTATTGGTTATTGCATTGAAGATGATCAGCGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAgtgagtttctgccttgccttgcctttctacataggaattgtatggattgttatatccagag-attatacggtaacagtttctaggttt--ctagctcaagtca-

upper sequence: GRMZM2G446189_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv11s0016g05720.t01 (Vitis vinifera), 5'ss of exon 3
CACCTTGTTAAGCTGATTGGATATTGTATTGAGGATGATCAAAGGTTACTTGTATATGAATTCATGGCACGGGGAAGTCTTGAAAATCATCTTTTCAGAAgtaagcaatcacctaacagagttaatgctttaagttgag-tagatttagtgcctt-tattactaatttgtttccccacttaggcctaaccagtttttttctt
 | |||||||| || ||||| || || ||||| ||||||||  |  | ||||| |||||||| ||| | || ||||| ||||||||||| |||||||||||| ||     ||         |    ||||    |   | |||| ||||||   | |  || | ||||  |         |    | | ||  |    |   
AATCTTGTTAAACTTATTGGGTACTGCATTGAAGATGATCAGCGACTGCTTGTTTATGAATTTATGACCCGTGGAAGCCTTGAAAATCACCTTTTCAGAAgtgagtttcgacactctctcctcttggcttatcatcatgatagaattagtgatatatggtatttattttataatttctgaaaatatgatcatctgccatg--