ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CTCCAATTGAGATGTTCCAGTCTGTCTTTACACTTGTTGAAGATGAAATGATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttgttgatttagtatcttaaattcttgaggattgccaatattccagttcatggtgcaattgctgttcatttaacactttgttttctgcatata...

Basic information

species	Zea mays
transcript	GRMZM2G444692_T03
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G444692_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os10g26140.3 (Oryza sativa), 5'ss of exon 10

CTCCAATTGAGATGTTCCAGTCTGTCTTTACACTTGTTGAAGATGAAATGATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttgttgatttagtatcttaaattcttgaggattgccaatattccagttcatggtgcaattgctgttcatttaacactttgttttctgcatata----
| |||| ||| |||||  ||||||| |||  |||||||||||| |||||||||| ||||||||| ||||||||| || ||||||| ||||||||||| ||||| || ||||||||||||| || || ||   |   | | |  |  |||  | ||  |||   | |||||||  | ||||   | | ||    | |  |     
CACCAAGTGAAATGTTTGAGTCTGTGTTTGTACTTGTTGAAGACGAAATGATGGCTGATCCTGCGTATCTTATTTCTATCATCATGGAGTTTCTACGAAGgtatttcttgttgatttagtgtcgtatataacta--gctagtaaccattaaactttgtggaatatttgctgt--agttaaatttctattcgtggtaacttgatc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211085833|gb|FL083835.1|FL083835

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|211085836|gb|FL083838.1|FL083838

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|71433592|gb|DR814642.1|DR814642

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|71436759|gb|DR817809.1|DR817809

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|116817309|gb|EC860144.1|EC860144

EST:     ATGGGTGATCCTGCATATCTTA-TGCTGTCATCATAGAGTTTCTACGGAG                         TGT-TC-AAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|33091123|gb|CF051117.1|CF051117

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|211085835|gb|FL083837.1|FL083837

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTTTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|211085832|gb|FL083834.1|FL083834

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|71433593|gb|DR814643.1|DR814643

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|71428498|gb|DR809548.1|DR809548

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|14206626|gb|BG840304.1|BG840304

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

EST: gi|33094193|gb|CF054187.1|CF054187

EST:     ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAG                         TGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC
genomic: ATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 91

CTCCAATTGAGATGTTCCAGTCTGTCTTTACACTTGTTGAAGATGAAATGATGGGTGATCCTGCATATCTTATTGCTGTCATCATAGAGTTTCTACGGAGgtaatttttg ... ctatttgcagTGTCTCAAAGGCTGGGCTTAAGGCTCCTCACAACCTTTATGTGATGACGGCGACACTACTAGCTCGTAGCAACCGTTACGCTGAAATAGCATTGTTTGTG

Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 113

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 109