1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATTGTGATTGGCTTGCCAATGTTTCGTTTCTGTTTTTTGTTATTTCATGGGTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaattttctgttctgactcataagtctataagattcttatgccaagaaaaatcaccgagtcaaagtctgtttgcatatacagtagaaagcagactgg...
species | Zea mays |
transcript | GRMZM2G444643_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTCTTCTCCGCCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAG CTATGAGGNCTTGTTGACTTTGGACAAAAAGAEST: gi|71767991|gb|DR965928.1|DR965928
genomic: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaatttt ... ttcgtttcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGA
EST: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAACTTTGATGGTCCEST: gi|78104262|gb|DV522680.1|DV522680
genomic: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaatttt ... ttcgtttcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAACTTTGATGGTCC
EST: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAACTTTGATGGTCCEST: gi|78086490|gb|DV514883.1|DV514883
genomic: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaatttt ... ttcgtttcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAACTTTGATGGTCC
EST: GTTTTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAG CTATGAGGTCTTGTTGTCTTTGGACAAAAAGAAGCACAACTTTGATGGTCC
genomic: GTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaatttt ... ttcgtttcagCTATGAGGTCTTGTTGACTTTGGACAAAAAGAAGCACAACTTTGATGGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGTGATTGGCTTGCCAATGTTTCGTTTCTGTTTTTTGTTATTTCATGGGTTCTTCTCCGTCTCACATATTTTCCGTTCTGGATTCTGAGAAGTACAAGgtaaaattttctgttctgactcataagtctataagattcttatgccaagaaaaatcaccgagtcaaagtctgtttgcatatacagtagaaagcagactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaaa