1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTGTAGAGAAACTGCAAATATACTGCAAAATCATTTTCCTGAAAGGCTGGCCATTGGATTTCTATTTAACCCCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctctcgacctttgcacatctatctgattttaattttaaaaaactgagaaaccaacatgtagtgttgatacagacaaaaaatttgcatttttcattctttaccaacttaagtttttcaaattctttcag
species | Zea mays |
transcript | GRMZM2G443453_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCATTGGATTTCTATTTAANNNNNNNAAAGTATTTGAAGCTTTTTATAAG GTCATCAAGATTTTCCTCGATCCAAAATCGGEST: gi|89250008|gb|DY621794.1|DY621794
genomic: CCATTGGATTTCTATTTAACCCCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctc ... attctttcagGTCATCAAGATTTTCCTCGATCCAAAATCGG
EST: CCCCCAAAGTATTTGAAGCTTTTTATAAG GTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTGEST: gi|60345764|gb|DN212737.1|DN212737
genomic: CCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctc ... attctttcagGTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTG
EST: CCCCCCAAAAGTATTTGAAGCTTTTTATAAG GTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTGEST: gi|32919241|gb|CF024053.1|CF024053
genomic: CCCCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctc ... attctttcagGTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTG
EST: CCCCCCAAAGTATTTGAAGCTTTTTATAAG GTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTG
genomic: CCCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctc ... attctttcagGTCATCAAGATTTTCCTCGATCCAAAATCGGTCGAGAAGGTGAACTTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTAGAGAAACTGCAAATATACTGCAAAATCATTTTCCTGAAAGGCTGGCCATTGGATTTCTATTTAACCCCCCCAAAGTATTTGAAGCTTTTTATAAGttaagtgctctcgacctttgcacatctatctgattttaattttaaaaaactgagaaaccaacatgtagtgttgatacagacaaaaaatttgcatttttcattctttaccaacttaagtttttcaaattctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC