1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCTGCACCTCATAACCAGTGCTCAAGTAATAGCAATCTTGGAAACGTTGCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAGgtaatatagtacttttctggttattttgtgaatttttttgtgtctgtactggtgcatatttgacaagctcagcttcacatggtgcaactatagctgtgat...
species | Zea mays |
transcript | GRMZM2G437460_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAG GTTAACTCAATCTGAATTCATTGTACCCTATTGGAAGTTCACAAGAAGCTTEST: gi|211024420|gb|FL142653.1|FL142653
genomic: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAGgtaatatagt ... gaattcacagGTTAACTCAATCTGAATTCATTGTACCCTATTGGAAGTTCACAAGAAGCTT
EST: ACAAGCTGTGGGCCACGAAGACTGTTTTTCCACATCTACTACAATCCCAG GGTAACTCAATTCTGAATTCATTGNACCCTTATTGGAAGTTCACAAGAAGCEST: gi|32931430|gb|CF036242.1|CF036242
genomic: ACAAGCTGTGG-CCACGAAGACTGTTTT-CCACATCTACTACAATCCCAGgtaatatagt ... gaattcacagGTTAACTCAAT-CTGAATTCATTGTACCCT-ATTGGAAGTTCACAAGAAGC
EST: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAG GTTAACTCAATCTGAATTCATTGTACCCTATTGGAAGTTCACAAGAAGCTTEST: gi|211024423|gb|FL142656.1|FL142656
genomic: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAGgtaatatagt ... gaattcacagGTTAACTCAATCTGAATTCATTGTACCCTATTGGAAGTTCACAAGAAGCTT
EST: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAG GTTAACTCAATCTGAATTCATTGTACCCCTATTGGAAGEST: gi|211071384|gb|FL173064.1|FL173064
genomic: GCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAGgtaatatagt ... gaattcacagGTTAACTCAATCTGAATTCATTGTACCC-TATTGGAAG
EST: CACAANCTGTGGCCNCGAAAGACTGTTTTCCACATCTACTACAATCCCAG GTTAACTCNATCTGAATTTCATTGTACCC
genomic: CACAAGCTGTGGCCACGAA-GACTGTTTTCCACATCTACTACAATCCCAGgtaatatagt ... gaattcacagGTTAACTCAATCTGAATT-CATTGTACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCTGCACCTCATAACCAGTGCTCAAGTAATAGCAATCTTGGAAACGTTGCACAAGCTGTGGCCACGAAGACTGTTTTCCACATCTACTACAATCCCAGgtaatatagtacttttctggttattttgtgaatttttttgtgtctgtactggtgcatatttgacaagctcagcttcacatggtgcaactatagctgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA