Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATATCAATTAACTTTGGGGCCGAATATGTTGTTGAATCTTCTGATGTCTTTACAACAACTGATAAAGCATTAACACACTTAAAGgtttgtgtgtaccagactaatttgtaacaatgttatctaattaactaactacatatatttttgtatcaaaaacatgttgatgtttctgttgtttgtttacag

Basic information

species Zea mays
transcript GRMZM2G435438_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435438_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g07490.1 (Oryza sativa), 5'ss of exon 7
---------------TATATCAATTAACTTTGGGGCCGAATATGTTGTTGAATCTTCTGATGTCTTTACAACAACTGATAAAGCATTAACACACTTAAAGgtttgtgtgtaccagactaatttgtaacaatgttatctaattaactaactacatatatttttgtatcaaaaacatgttgatgtttctgttgtttgtttacag
               |   |    ||||||||| || || ||||||||||||||||| | ||| |||||||||||||| || ||||   |||| || |||||||||         || | ||    ||| ||  |||||| | |  ||   ||    ||| | | |  | || ||| |||||||| | |   ||||||  ||
AGATCCAGCAGATATTCCTTGGGGTAACTTTGGAGCTGAGTATGTTGTTGAATCTTCAGGTGTTTTTACAACAACTGAAAAGGCATCGGCACATTTGAAGgtttgtac-------accatttctatacattgccatctaactgagaaatggcaagcttttatat-tggataaaatggtgatgtttttatgccttgtttgtag