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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAACTTCTTCATTTATGTCCAAGATTACAATGAAGCTGATCCAAGGACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacctctctgcttgttacattatactcatttcgttgctagttttgtggtaacactcagatgaacagtaccccgtttccgcttacaaaaaaaaaaa...

Basic information

species Zea mays
transcript GRMZM2G435373_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G435373_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g23860.1 (Oryza sativa), 5'ss of exon 5
CAAGGAACTTCTTCATTTATGTCCAAGATTACAATGAAGCTGATCCAAGGACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacctctctgcttgttacattatactcatttcgttgctagttttgtg-gtaacactcagatgaacagtacccc-gtttccgcttacaaaaaaaaaaa
||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| || || |||||||   |||||||||||||||| ||||||| || ||     || || || || | || |||   | ||   |||  ||   |     ||    | ||    ||    | ||  |   | | | |  |   
CAAGGAACTTCTTCATTTACGTCCAAGATTACAATGAAGCTGATCCAAAAACACATCAAGGGTTGGATCTTACTACAATGACAACTAGAGAACTGATAGCgtgagtacactagtgtttcttgcactgtattcaaccctttctcagtagtgcatggcttccttttctaaatgaaacaatagatttggggcatatatactat--

upper sequence: GRMZM2G435373_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g34540.1 (Oryza sativa), 5'ss of exon 5
CAAGGAACTTCTTCATTTATGTCCAAGATTACAATGAAGCTGATCCAAGGACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacctctctgcttgttacattatactcatttcgttgctagttttgtggtaacactcagatgaacagtaccccgtttccgcttacaaaaaaaaaaa-
|||| |||||||||||||| |||||||||||  |||||||||||||||  ||||||||||| || || |||||||   |||||||||||||||| ||||||| || || ||  |||||| | |    || |     | || ||  || |   | ||    || ||    |  |  ||  ||    ||| |    |   |  
CAAGAAACTTCTTCATTTACGTCCAAGATTATGATGAAGCTGATCCAAAAACACATCAAGGGTTGGATCTTACTACAATGACAACTAGAGAACTGATAGCgtgagtacatcagtgcttgcttctcattagtgcacacctt-ctgtttctaaaggaaacaacaaatttggaacatgcccattatctttatatgggaggtatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32846965|gb|CD986646.1|CD986646
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|6031345|gb|AW076202.1|AW076202
EST:     GATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGNTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: GATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32938598|gb|CF043417.1|CF043417
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|33094579|gb|CF054573.1|CF054573
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32850140|gb|CD989821.1|CD989821
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32939909|gb|CF044728.1|CF044728
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32932660|gb|CF037472.1|CF037472
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|211034436|gb|FL381555.1|FL381555
EST:     GTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: GTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32932658|gb|CF037470.1|CF037470
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|33104315|gb|CF064275.1|CF064275
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
EST: gi|32939179|gb|CF043998.1|CF043998
EST:     ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGC                         AAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC
genomic: ACACATCAAGGATTAGACCTTACTAGGGTGACAACTAGAGAACTTATAGCgttagcacct ... tatatttcagAAAATATGGTTTAAGTGATGATACAGTGGATTTCATTGGACATGCACTTGC