1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGATCATGCGCAAACGCAGGGCTGGGAAGCTTCCTGGAGATACCGCATCTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgacaccgcgtcaacttaattccctcgttagcttctgctatcaggttcggctcattgatgagcaactctttgcttactcgtccag
species | Zea mays |
transcript | GRMZM2G433591_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCGAAGTGGCCGTACCCAACT GAAGACGACAAGGCCAGGCTGGTGCAGGAAACGGGATTGCAGCTAAAGCAGEST: gi|60346164|gb|DN213137.1|DN213137
genomic: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgaca ... actcgtccagGAAGACGACAAGGCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAA
EST: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACT GAAGACGACAAGGCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAAEST: gi|7844336|gb|AW787558.1|AW787558
genomic: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgaca ... actcgtccagGAAGACGACAAGGCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAA
EST: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCGAAGTGGCCGTACCCAACT GAAGACGACAAGGCCAGGCTGGTGCAGGAAACGGGATTGCAGCTAAAGCAGEST: gi|211168938|gb|FL462174.1|FL462174
genomic: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgaca ... actcgtccagGAAGACGACAAGGCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAA
EST: CTGTACTGAAAGCTTGGTGGCAASYTCATTCCAAGTGGCCGTACCCAACT GAAGACGACAAGSCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAA
genomic: CTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgaca ... actcgtccagGAAGACGACAAGGCCAGACTGGTGCAGGAAACGGGGTTGCAGCTAAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGATCATGCGCAAACGCAGGGCTGGGAAGCTTCCTGGAGATACCGCATCTGTACTGAAAGCTTGGTGGCAAGCTCATTCCAAGTGGCCGTACCCAACTgtacgtgacaccgcgtcaacttaattccctcgttagcttctgctatcaggttcggctcattgatgagcaactctttgcttactcgtccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA