1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGGCTGCTCCATCATTAGCTGTTCGTTTGTGGATGACAATAATGTCTATTACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatctgaaatcatgatcttttactaatgctagttaactcgtttttaatacttgttcaatttacagcttgttttagttaatttctcagtgagccttttctatttctcgtgcacaaaatggttatgtatcggtacatcttgtag
species | Zea mays |
transcript | GRMZM2G430027_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAG GGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTGEST: gi|211183657|gb|FL219825.1|FL219825
genomic: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatc ... catcttgtagGGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTG
EST: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAG GGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTGEST: gi|5566749|gb|AI881615.1|AI881615
genomic: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatc ... catcttgtagGGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTG
EST: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAG GGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTGEST: gi|211183658|gb|FL219826.1|FL219826
genomic: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatc ... catcttgtagGGCCGAATCCTTGTATTTGCAGTTGAAGATGGAAGTTTGCAATTAATTGTG
EST: ACTGKGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAG GGCCGAATCCTTGTA
genomic: ACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatc ... catcttgtagGGCCGAATCCTTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCTGCTCCATCATTAGCTGTTCGTTTGTGGATGACAATAATGTCTATTACTGTGTGGGAACTGCATATGTTATACCTGAAGAAAATGAACCAACCAAGgtgatatatctgaaatcatgatcttttactaatgctagttaactcgtttttaatacttgttcaatttacagcttgttttagttaatttctcagtgagccttttctatttctcgtgcacaaaatggttatgtatcggtacatcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA