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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaaccatcaccttcttctagcatttgattattcattttgttggttagccttgtcctcagttgaatttctttgtcctccaactgtttcagttaagat...

Basic information

species Zea mays
transcript GRMZM2G426275_T04
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148986617|gb|EE030388.2|EE030388
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526749|gb|FL258558.1|FL258558
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTC
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTC
EST: gi|211529739|gb|FL258565.1|FL258565
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526751|gb|FL258560.1|FL258560
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTT
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTT
EST: gi|211529737|gb|FL258563.1|FL258563
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|149082839|gb|EE172063.2|EE172063
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211529741|gb|FL258567.1|FL258567
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAA
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAA
EST: gi|211526748|gb|FL258557.1|FL258557
EST:     GCAAGATGAAGAACGTGCACATCTGAGGACTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGC
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGC
EST: gi|211526745|gb|FL258554.1|FL258554
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAA
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAA
EST: gi|211526750|gb|FL258559.1|FL258559
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|71439957|gb|DR821007.1|DR821007
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|211526744|gb|FL258553.1|FL258553
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCT
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCT
EST: gi|76285204|gb|DV024772.1|DV024772
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
EST: gi|74244431|gb|DT652345.1|DT652345
EST:     GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAA                         AAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG
genomic: GCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaacca ... gttgatgcagAAAGGAGTGTGCAGAAGCTACTAGACAAGAATGTGGTTCCCGTTGCTGCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATAAAGGTACGGCAAGATGAAGAACGTGCACATCTGAGGATTTTGATAAAGGATCTTGAAAgtatgaaccatcaccttcttctagcatttgattattcattttgttggttagccttgtcctcagttgaatttctttgtcctccaactgtttcagttaagat

- - - - - -  GCAAGA
- - - - - - -  AAGATG
- - - - - - - - -  TGAAGA
- - - - - - - - - -  AAGAAC
- - - - - - - - - - - - - - - - - -  GAGGAT