1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGTCTGTTGCCACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcactaccagtctaccacataactatcatttcacaatttttagagagagcttaaattactcacctgttctttgtacag
species | Zea mays |
transcript | GRMZM2G425377_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAG GTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAGEST: gi|26457484|gb|CA829067.1|CA829067
genomic: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcac ... ctttgtacagGTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAG
EST: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAG GTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAGEST: gi|160481508|gb|EY254340.1|EY254340
genomic: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcac ... ctttgtacagGTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAG
EST: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAG GTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAGEST: gi|160481532|gb|EY254364.1|EY254364
genomic: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcac ... ctttgtacagGTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAG
EST: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAG GTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAG
genomic: ACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcac ... ctttgtacagGTCACTTTGTGGTGTACAGATTCTCTGAACCCTAAATCTTATCTGGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTGAGGTTGCCAAAGCACGCGCAAGCACAGCCAAAGTTGTCTGTTGCCACTTCTCAGCTGATGGTAAACTGCTTGCTACTGGTGGTCATGATAAAAAGgtgtgatcactaccagtctaccacataactatcatttcacaatttttagagagagcttaaattactcacctgttctttgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG