1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATTGGAACTACTCAAGGATCCAATGGCATGTATAATCGTTATGATGGCATCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagattgtcttgttttaaccttttacttggcactgtatcttgatgtatattctctcgagccactcataacttcaatgcaacttcactatcag
species | Zea mays |
transcript | GRMZM2G422938_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAG GGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCATEST: gi|47962573|gb|CN845282.1|CN845282
genomic: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagat ... tcactatcagGGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCAT
EST: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAG GGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCATEST: gi|50327384|gb|CO522510.1|CO522510
genomic: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagat ... tcactatcagGGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCAT
EST: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAG GGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCATEST: gi|89761789|gb|DY689662.1|DY689662
genomic: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagat ... tcactatcagGGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCAT
EST: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAG GGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCATEST: gi|91051790|gb|EB162208.1|EB162208
genomic: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagat ... tcactatcagGGAAACAAGAGCACTGGGGATAACTTTGATGGGGTTCCCAATATAGATCAT
EST: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAA GGAAACAAGAGCACTGGGGATAACTTTG
genomic: TCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagat ... tcactatcagGGAAACAAGAGCACTGGGGATAACTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTGGAACTACTCAAGGATCCAATGGCATGTATAATCGTTATGATGGCATCCCAGTATCATGGGATGAACATGCTGTTACATCTTGTTCTGGCGGGAAGgtatttagattgtcttgttttaaccttttacttggcactgtatcttgatgtatattctctcgagccactcataacttcaatgcaacttcactatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT