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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaacacgacagggcttacttttgcggccatttacattattttttgtctattatcctcactcgccctctattatgtttgcag

Basic information

species Zea mays
transcript GRMZM2G421857_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 4
CCTCTTTCAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgt-------gtgctgaacacgacagggc-----ttacttttgcggccatttaca----ttattttttgtctattatcctcactcgccctctattatgtttgcag
|| || || ||||| ||||||||||| |||||||| ||||||||||| || ||||||||       ||  ||||   |            ||| ||||   ||   || ||    || | | ||  || || || |  |       ||||  |||||||||
CCCCTGTCGGTTGAGTTGGGACCTGGTATTCTTGGGAACATTTTTGATGGGATCCAGgtacttcaagttgtgaatgtggagtaatttcatttattttttaagctccttgcactccttgtctgttaactcttgtcatgtcctttttcctatcgtgtttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649012|gb|BM497831.1|BM497831
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32838516|gb|CD978194.1|CD978194
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32925687|gb|CF030499.1|CF030499
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32921771|gb|CF026583.1|CF026583
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32924704|gb|CF029516.1|CF029516
EST:     CAGTTGAATTGGGACCAGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32925234|gb|CF030046.1|CF030046
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32838453|gb|CD978131.1|CD978131
EST:     GAATTCTTGGAAACATTTTTGACGGTATACAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: GAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|211532167|gb|FL123441.1|FL123441
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCA----TATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|18649727|gb|BM498546.1|BM498546
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|6636981|gb|AW261253.1|AW261253
EST:     ATTTTTGACGGTATCCAG                         CGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: ATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|32848240|gb|CD987921.1|CD987921
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
EST: gi|211541195|gb|FL123492.1|FL123492
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGACCTCTAAAAACCATCGCCTATTAAAGTCAGGAGATGTGTATATTCCTC
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCG-CTATT-AAGTCAGGAGATGTGTATATTCCTC
EST: gi|32934325|gb|CF039137.1|CF039137
EST:     CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAG                         CGGCCTCTAAAAGCCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT
genomic: CAGTTGAATTGGGACCTGGAATTCTTGGAAACATTTTTGACGGTATCCAGgtgtgctgaa ... atgtttgcagCGACCTCTAAAAACCATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGT