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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag

Basic information

species Zea mays
transcript GRMZM2G421857_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g07870.1 (Oryza sativa), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtg-acttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag--
   || |||||||| || ||||||||||| ||||| |||||||| |||||||||||||||||||||||||  |||||| | ||| |||||   || |||||||  | | ||   |||    || ||  |  ||   ||    |    || || || |  | | | | ||     || | |   | ||  ||||||    | | ||  |   ||  | |     
ACTATTGCTATTAAATCTGGAGATGTGTACATTCCGCGTGGTGTCTCAGTTCCTGCCCTTGACAAAGATGCTTTGTGGCATTTTAAGCCAGAAAAACTAGgtaaagtattttgtata----cttcaggggggaggggggggggttaccttttgttatcctttttcattta-gcatgcagtgcaaggcactctaaaatcatctcctattatcattatgctgcag

upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA07G00430.1 (Glycine max), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag
   || ||||  |  || || ||||| ||||||||||||||||| || ||||| || || |||||||||  | | ||||||||||| || | |||  | ||||       ||  || |       ||  ||  |  ||| |  ||      || ||  |   |      | |||    | ||||  | | |    |  ||   | |||  |         
ACTATTGCTAAAAGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgtaccagacaaat-tatttttctttttactgttaaagttctatatagaaaattagtattacgtggaccattttt---ttctgatattctatg---atattcattggtgacag--------

upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA08G23990.1 (Glycine max), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaata-ggttttcttgtgctatatttccag
   || ||||     || || ||||| ||||||||||||||||| || ||||| || || |||||||||  | | ||||||||||| || | |||  | ||||    |   ||| | ||  |   || ||        | |  | | | | |||   |  |  ||||  ||  || ||  |  | |    || ||  | ||  || |||  |         
ACTATTGCTAAACGATCTGGTGATGTCTATATTCCTCGTGGTGTCTCTGTTCCAGCACTCGACAAAGATACACTTTGGGAATTTCAACCTAAGAAAATTGgta----ccagacaaattatttttcttttta------ctgttaaagttttatttagaaaat--aagtattacgtggaccatttttcctgatatatgtgattcactggtgacag--------

upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv09s0054g00890.t01 (Vitis vinifera), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgt-gacttaacatagtacctccattgtt--gaaatggttttgcatg-ctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag
   || || |  |  || || ||||| || |||||||||||||| || |||||||| |||||||||||| || | |||||||| ||||| |  ||  |||||| |  |   ||  ||  |      |  ||  ||  || |||   |   || || || | || |   | |    ||   ||| ||||   | | |  |   | |  | ||| ||         
ACCATTGCAAAAATATCTGGTGATGTCTACATTCCTCGTGGTGTATCTGTTCCTGCACTTGACAAAGATATACTCTGGGAATTCCAGCCTAAAAAATTAGgtaatcaaagaaatgtatcattatagtcatttggaggtgatttgaaaaaactattattttgatttgagactc---ttcatactctgat-taaaccagtttcatctcttggtggtag--------

upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g02580.t01 (Vitis vinifera), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag
   || ||||  |  || || ||||| |||||||||||||||||||| || || |||||||||||||||  | | ||||| || ||||| | ||| ||||||| ||  | || ||  ||   |    ||   | | | ||||    ||||  ||          |  |||||     | |||||||||   |||| | ||| ||    || |   | |||
ACTATTGCTAAGAGATCTGGTGATGTCTATATTCCTCGTGGTGTTTCTGTCCCAGCCCTTGACAAAGATACACTATGGGAGTTCCAGCCCAAGAAACTAGgtactgcttgaatatgctaatac----gtgatagttggtttgtggtctgtcctt----------aactgtat-----cattgatgctaataaaattgctttcctctcactgt---tgcag

upper sequence: GRMZM2G421857_T01 (Zea mays), 5'ss of exon 5
lower sequence: PP1S8_312V6.1 (Physcomitrella patens), 5'ss of exon 5
---ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgt-gctatatttccag
   || ||  || |||     |||||||||||||||||||| ||| |||| ||||| ||||| | | |      |||||||||  | || |  | ||| |  ||||| ||  |    || |||     |||   |||| |      | || | |||| ||| | ||    |   |    || || || |  | | |  | | ||||| |  ||| ||||  
GCTATTGCACTTCAGTGTCAGGATGTGTATATTCCTCGTGGAGTTGCAGTGCCTGCTCTTGATAGAAAGAGGCAGTGGGAATTCAAACCTA-AAGGCTTG--Agtgagtttgc----tatctc-----ttg---tggtctgttcaccagtatctgttctctttcagcaaaaacag----tttat-ctttacagaaaattgtgcttgttgtcatacttcct-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211535175|gb|FL123464.1|FL123464
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         G-GTTGGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|211155994|gb|FL123529.1|FL123529
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32934325|gb|CF039137.1|CF039137
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152795|gb|FL123505.1|FL123505
EST:     GCCCTTGACAAAGATGTATTGGTGGGAATTTCAGC-AACAAAGCTAGGTG                         G-GTTGGAGATGTC-TCAC
genomic: GCCCTTGACAAAGATGTATTG-TGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCAC
EST: gi|211541200|gb|FL123497.1|FL123497
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211156004|gb|FL123539.1|FL123539
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541192|gb|FL123489.1|FL123489
EST:     GCCCTTGACAAAGATGTATTGTGGGGAATTTCAGCCAACGAAGCTAGGT-                         G-GTTGCAGATGTCATCACAGG
genomic: GCCCTTGACAAAGATGTATTGTGGG-AATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGG
EST: gi|32848240|gb|CD987921.1|CD987921
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152802|gb|FL123512.1|FL123512
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|87152921|gb|DY397710.1|DY397710
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532174|gb|FL123448.1|FL123448
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148966043|gb|EE016977.2|EE016977
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149095258|gb|EE180885.2|EE180885
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|18654719|gb|BM499524.1|BM499524
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32924704|gb|CF029516.1|CF029516
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32910759|gb|CF015571.1|CF015571
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149098348|gb|EE184321.2|EE184321
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|18649012|gb|BM497831.1|BM497831
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541195|gb|FL123492.1|FL123492
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTA-G--                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211156001|gb|FL123536.1|FL123536
EST:     GCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAAC-ACAGCTAGGT-                         GT-T-GGAGATGTCATCA
genomic: GCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGA-AGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCA
EST: gi|211529167|gb|FL123433.1|FL123433
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532167|gb|FL123441.1|FL123441
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTA-G--                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152797|gb|FL123507.1|FL123507
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211541196|gb|FL123493.1|FL123493
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211154397|gb|FL123516.1|FL123516
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGGTGGAGATCTATACGCTA
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCTA
EST: gi|211538172|gb|FL123470.1|FL123470
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCTACTGTTTT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCTACTGTTTT
EST: gi|6021119|gb|AW066047.1|AW066047
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32921771|gb|CF026583.1|CF026583
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATTACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211532178|gb|FL123452.1|FL123452
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149070206|gb|EE158608.2|EE158608
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211154396|gb|FL123515.1|FL123515
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148941860|gb|EC886839.2|EC886839
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148968185|gb|EE019478.2|EE019478
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|18654718|gb|BM499523.1|BM499523
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211535168|gb|FL123457.1|FL123457
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|31355789|gb|CD440146.1|CD440146
EST:     TGCGCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|6636981|gb|AW261253.1|AW261253
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTA-G--                         GTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152796|gb|FL123506.1|FL123506
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|148962822|gb|EE013742.2|EE013742
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211535166|gb|FL123455.1|FL123455
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32925687|gb|CF030499.1|CF030499
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|149105608|gb|EE291151.2|EE291151
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211529163|gb|FL123429.1|FL123429
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACANGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACA-GGTGGAGATCTATACGCT
EST: gi|32838516|gb|CD978194.1|CD978194
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|211152790|gb|FL123500.1|FL123500
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGG-TGGAGATCTATACGCT
EST: gi|148966031|gb|EE016965.2|EE016965
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT
EST: gi|32925234|gb|CF030046.1|CF030046
EST:     TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACAAAGCTAGGT-                         GT-T-GGAGATGTCATCACAGGTGGAGATCTATACGCT
genomic: TGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 467

ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 641

ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 552

ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 625

ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaac ... atatttccagGTGTTGGAGATGTCATCACAGGTGGAGATCTATACGCT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCGCTATTAAGTCAGGAGATGTGTATATTCCTCGTGGTGTTTCAGTTCCTGCCCTTGACAAAGATGTATTGTGGGAATTTCAGCCAACGAAGCTAGGTAgtgacttaacatagtacctccattgttgaaatggttttgcatgctgtttttgttatctctaagttgtatttgaactttgatgctatctaaataggttttcttgtgctatatttccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG