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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGAGGAGGAGAAACATCTTCACAAGTCCCTCTTTGACTCTGCTCATGAAATGCCCATGAAACCAAATGGTAGTCTGCTTGTTGTCTACTACCTTCGGgtaaatattctgattctcattttttgtatttaaaaccatattaagaggcactatggaaattgcagatgactaaaactttagggtatactgttatgatgaa...

Basic information

species Zea mays
transcript GRMZM2G416426_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G416426_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g52700.1 (Oryza sativa), 5'ss of exon 7
TTCTGAGGAGGAGAAACATCTTCACAAGTCCCTCTTTGACTCTGCTCATGAAATGCCCATGAAACCAAATGGTAGTCTGCTTGTTGTCTACTACCTTCGGgtaaatattctgattctcat----tttttgtatttaaaaccatattaagaggcactatggaaattgcagatgactaaaactttagggtatactgttatgatgaa
||||||||| | |||||||||||| ||||| ||| |||||| ||||| ||||||||||||| | |||  ||||||||| |||||||| | |||||| | |||||| |  |       | |           |   | |   | ||  ||   || ||  | | || |  |||            |  || | ||   |      
TTCTGAGGAAGGGAAACATCTTCATAAGTCGCTCCTTGACTGTGCTCGTGAAATGCCCATGGAGCCATGTGGTAGTCTACTTGTTGTTTTCTACCTCCAGgtaaaaaacccacccaccctaccaccaccacagagagagagagatagagttccattacaggagttactcatgtgcgtgcaacctgcataaattggagtac----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352086|gb|CD436443.1|CD436443
EST:     AAATGCCCATGAAACCAAATGGTAGTCTGCTTGTTGTCTACTACCTTCGG                         CGTTATCGGTATTTGGAGGCATATGAGGTTGACCGTAGTCTTCAAAAATTT
genomic: AAATGCCCATGAAACCAAATGGTAGTCTGCTTGTTGTCTACTACCTTCGGgtaaatattc ... gttttgttagCGTTATCGGTATTTGGAGGCATATGAGGTTGACCGTAGTCTTCAAAAATTT