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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTAGGGTCTGTCATGTGCTTGGGTGTCACTGCTGGTGCCTATGTTCTCACCCTCTTTGCAgtaagtgtgaccatgagatgactaccttctcgatcgttcttccgttgagtgcttgctaagaatgttatgtacacgcaccatcacagactaagtatcggga...

Basic information

species Zea mays
transcript GRMZM2G413857_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G413857_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g09670.1 (Oryza sativa), 5'ss of exon 5
TTTAGGGTCTGTCATGTGCTTGGGTGTCACTGCTGGTGCCTATGTTCTCACCCTCTTTGCAgtaagtgtgaccatgagatgactacctt----ctcga-tcgttcttccgttgagtgcttgctaagaatgttatgtacacgcaccatcacagactaagtatcggga
 ||||| ||||| ||||| |||||||||||||| ||||||||  ||||||||||||||||||||||| | ||  ||||     ||  |     || |  | ||  || | ||   |  ||  ||||||||| ||||| ||  |   ||||||              
ATTAGGATCTGTGATGTGTTTGGGTGTCACTGCCGGTGCCTACATTCTCACCCTCTTTGCAgtaagtattactctgag-cagttatttcaaagcttgccttgtcttttctttttctttttcttaagaatgt-atgtatac--attgtcacag--------------

upper sequence: GRMZM2G413857_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G30270.2 (Glycine max), 5'ss of exon 5
TTTAGGGTCTGTCATGTGCTTGGGTGTCACTGCTGGTGCCTATGTTCTCACCCTCTTTGCAgtaagtgtgaccatgaga-tgactaccttctcgatcgttcttccgttgagtgcttgctaagaatgttatgtacacgcaccatcacagactaagtatcggga
  || ||   ||  ||||||||||||| || |||||||| ||||| ||||| || ||||| ||||||  |    || || | |  || |  || | | |    |  |  |||  | |  ||  ||      |   |  |   |  |||              
GCTAAGGGAGGTTCTGTGCTTGGGTGTAACAGCTGGTGCTTATGTCCTCACTCTATTTGCTgtaagttggcatttgtgaattataacttaatccaccataa--caatctagta-tggtaaaccatcgagctttttcctaatttggcag--------------