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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAGgtaacaagggtctttaaaagtttatttaatttctgattgatgttttgcatttaccaaagtgagttgtttcacgtttcag

Basic information

species Zea mays
transcript GRMZM2G408305_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G408305_T01 (Zea mays), 5'ss of exon 12
lower sequence: PP1S143_122V6.1 (Physcomitrella patens), 5'ss of exon 10
GGTTTTGGATTGGATTACAGTGAACTCAGAGAGTACACTCATGGTTTCTTTAGTAACGTTGCTGAAATTTTGGGTGATAGTTTTACACAGgtaacaa----gggtctttaaaagtttatttaatttctgattga--tg----ttttgcattta-ccaaagtgagttgtttcacgtttcag-----------------------------------------------------------------------------------------------
|| |||| |||||| |  |||||| |  |||||||||| ||||||||||||||  | |||||||||||| |||  ||     |    | ||||           || |||  | | | ||    || || ||||  ||    |||||  || |  || ||  |    | |||   ||  |                                                                                               
GGATTTGAATTGGAATTTAGTGAATTGCGAGAGTACACACATGGTTTCTTTAGCCATGTTGCTGAAATTCTGGAAGAGGACGTGGTTCCGgtacgtgctttaaatcattactactattttcttcttttggttgagctgaagtttttgtcttaaatcagagacaccaatgtcaaagttgtgtgaatgaacgtacttaaggtgtaaatctaacagtttgtcctcaatgccatgagcatctcgctgattcttgtcgaaacgtggcacaaattttgcag