1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtcttataaccatatttatcgccatatttacatgtaaaaactgcagtagatgaccttctctctctctctccctctcttcaaagtgcag
species | Zea mays |
transcript | GRMZM2G408242_T04 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTAYATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTEST: gi|88748070|gb|DY532211.1|DY532211
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGT
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCAGATGATAAGTATCGGTTTGAAATEST: gi|211115731|gb|FL229702.1|FL229702
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCC-GATGATAAGTATCGGTTTGAAAT
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAANAGATGTGTG GTTCCGATGATAAGTATCGGTTTGEST: gi|211115727|gb|FL229698.1|FL229698
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTG
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211117332|gb|FL229741.1|FL229741
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGEST: gi|211116530|gb|FL229719.1|FL229719
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGG
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211115740|gb|FL229711.1|FL229711
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTYATATAAAAAAGATGTGTG GTTCCGATGATEST: gi|50333682|gb|CO528808.1|CO528808
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGAT
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211116524|gb|FL229713.1|FL229713
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAA-GATGTGTG GTTCCGATGATAAGTATCGGGTTGAAATTAAGEST: gi|211117330|gb|FL229739.1|FL229739
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAG
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211116534|gb|FL229723.1|FL229723
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGEST: gi|22818772|gb|BU498862.1|BU498862
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGG
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|17970138|gb|BM276903.1|BM276903
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|5325108|gb|AI783299.1|AI783299
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|148937775|gb|EC881986.2|EC881986
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211114947|gb|FL229695.1|FL229695
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAEST: gi|211117325|gb|FL229734.1|FL229734
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTEST: gi|6020447|gb|AW065375.1|AW065375
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTT
EST: GAGTACAGGGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|149084617|gb|EE174095.2|EE174095
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|148990759|gb|EE032170.2|EE032170
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|93015766|gb|EB641286.1|EB641286
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGGTTTGAAATTAAGEST: gi|211115729|gb|FL229700.1|FL229700
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGG-TTTGAAATTAAG
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAAEST: gi|26456727|gb|CA828310.1|CA828310
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|20803321|gb|BQ294371.1|BQ294371
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|22521612|gb|BU080423.1|BU080423
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAAEST: gi|211114945|gb|FL229693.1|FL229693
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAAGGATATTCTTGAAATGGAAA
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAADAGATGTGTG GTTCCGATGATAAGTATCCGGTTTGAAATTAAGGATATEST: gi|211115726|gb|FL229697.1|FL229697
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATC-GGTTTGAAATTAAGGATAT
EST: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTG GTTCCGATGATAAGTATCGGTTTGAAATTAAAGGATATTCTTGAAATGGAA
genomic: GAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtctta ... caaagtgcagGTTCCGATGATAAGTATCGGTTTGAAATTAA-GGATATTCTTGAAATGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGTTTGGTTGCACCTACTTGTTTGTATTTGGCATCTAAGGTGGAGGAGAGTACAGTGCAAGCCCGACTTCTTGTATTTTATATAAAAAAGATGTGTGgtgtgtcttataaccatatttatcgccatatttacatgtaaaaactgcagtagatgaccttctctctctctctccctctcttcaaagtgcag
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