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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttatggttaaatcttgga...

Basic information

species Zea mays
transcript GRMZM2G406553_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g58130.1 (Oryza sativa), 5'ss of exon 5
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttatggttaaatcttgga
|||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||  ||||    ||||    | |||||||||||| ||||||||||||||    ||| |   ||||  |||| |||||| 
TGGGATCTGACAGCTGGAAAGTTATTACATGATTTCAAGTGTCATGAAGGCCAGATTCAGTGCATAGATTTCCATCCCCATGAGTTCCTTCTGGCAACAGgttaggttcagatgttacaatgctaatctgacacttagtcatcaacttttctttgacccttttggttgtacagcgtagtctgttatacttaactcttggg

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G00890.1 (Glycine max), 5'ss of exon 6
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaattt-------acaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttatggttaaatcttgga
|||||||| || || || ||  | || ||||| || || ||||| ||||| |||||||| || ||||||||||||||| ||||||| || || ||||||||||||  | |   ||        |  ||| | ||   |  |||| ||| |        |       || |      |  |   |  |  |||   |||| |      
TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGATCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttacttttctgatgaaatcatgaaaattagcacctta-ctggtgtgacaggtcaactatttctcccaccaaaaccaatctccttagcattaatt------

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA05G09360.1 (Glycine max), 5'ss of exon 6
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttat--ggttaaatcttgga-
|||||||| || || || ||  | || ||||| || || ||||| ||||| ||| |||| || ||||||||||||||| ||||||| || || ||||||||||||  | |   |||   ||| |    |     |||     | |||   | ||| |      || ||| ||   |  || ||| |  | | | || ||  | 
TGGGATCTGACTGCGGGGAAACTCTTGCATGATTTTAAATGTCACGAGGGCCAGGTCCAATGTATAGATTTTCATCCCAATGAGTTTCTACTAGCAACAGgttagtcttact-tttctgatgaaatcttgaaaattagtaccttacta--ccttgacaagcaagggtgtgtttgatttttctttgtttgttgatatgtttaat

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: AT5G08390.1 (Arabidopsis thaliana), 5'ss of exon 6
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcag---aatttacaatgcatatctacttcttaactgttaacttttctttgtcccttttggttgtattatgtacttgtttatggttaaatcttgga
|||||| | || ||||||||  | || ||||| || ||| ||||||| ||  | || ||| |  ||||||||||||||||||| || || ||||||||||||  |  | |    || |    |  | |    || |   | ||  ||  |||||   ||  | |    || |   |   |  ||     | || | ||||   
TGGGATTTGACTGCTGGAAAACTTTTGCATGAGTTTAAGAGTCATGAAGGGAAAATTCAGAGTCTAGATTTTCATCCCCATGAATTTCTGCTGGCAACAGgtctgtataactctaagtagggaaacttcgtaacattgaagctcctagtttttcgg-gtgacatagatttatcacaatgatatgaacccgatttattctta--

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: AT5G23430.2 (Arabidopsis thaliana), 5'ss of exon 6
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggttcagaatttacaatgcatatctacttcttaactgttaacttttc--tttgtcccttttggttgta-ttatgtacttgtttatggttaaatcttgga
|||||| | |||||||||||  |  |    || || ||| ||||||| || || || ||  || ||||||||||||| ||||| ||||| ||||||||||||| |  | |   || | |||   || |  |  |  ||     ||||| |    |       | || |   |  | | |    |||    |   |  |     
TGGGATTTAACAGCTGGAAAACTGCTGACCGAGTTTAAGAGTCATGAAGGGCAAATTCAAAGCCTAGATTTTCATCCTCATGAATTCCTACTGGCAACAGgtttgtattactcttaaaaatttctaacaccaacacaaaataaaacttctaggctaagagtgtctgatcacaactgtattgcggttaccagcccagccca---

upper sequence: GRMZM2G406553_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv10s0071g01150.t01 (Vitis vinifera), 5'ss of exon 5
TGGGATCTTACAGCTGGAAAGTTATTACATGAATTCAAGTGTCATGAGGGTCAGATCCAGTGCATAGATTTTCATCCCCATGAGTTCCTCCTGGCAACAGgttaggt-tcagaatttacaatgcatatctacttcttaactgttaacttttctttg-----tcccttttggttgtattatgtacttgtttatggttaaatcttgga
|||||||| || ||||||||||| || || || |||||  |||||||||| ||| | |||||||||||||||||||| ||||| || || |||||||||||| ||   ||  | | || | |||||  |   ||||    | |  |   ||   ||     | | ||||| || |   ||| | |   | |   |   ||      
TGGGATCTGACTGCTGGAAAGTTGTTGCACGATTTCAAAAGTCATGAGGGCCAGCTTCAGTGCATAGATTTTCATCCTCATGAATTTCTGCTGGCAACAGgtcagaaatcttattgtatactgcattccgtgttctcccatttctatgattaaatgcaaatttcattttgtttattgcatgcaatctctcactatggcat------