1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctctcagctgaaagtattcatttttctgtcaattgttgttgtgctcttagtgatggcctgcctgaagcatcaggcagtgctaatatcaattatttttcttactattataagctgtgctgatgctgatgtaactcattctgaactgcatttgcctccag
species | Zea mays |
transcript | GRMZM2G404855_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|60355306|gb|DN222279.1|DN222279
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|6166676|gb|AW144940.1|AW144940
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|60354405|gb|DN221378.1|DN221378
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATTATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|6952333|gb|AW424401.1|AW424401
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|6195048|gb|AW147152.1|AW147152
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAAEST: gi|148958341|gb|EC904565.2|EC904565
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAA
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|60350137|gb|DN217110.1|DN217110
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATTATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|33102686|gb|CF062646.1|CF062646
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|71310901|gb|DR791753.1|DR791753
genomic: ACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: AGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTATEST: gi|76908322|gb|DV162882.1|DV162882
genomic: AGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
EST: AGGAGGTCATCATTGACAATTGTTGTATGACG CTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
genomic: AGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctc ... ttgcctccagCTTGTGAAGAATCCTGGTCTTTTTGATGTATTAGTGATGCCAAACCTCTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGCCGTGAAGTGGCTGAGACGTACCCTGAAATTCAATACGAGGAGGTCATCATTGACAATTGTTGTATGACGgtatgttctctcagctgaaagtattcatttttctgtcaattgttgttgtgctcttagtgatggcctgcctgaagcatcaggcagtgctaatatcaattatttttcttactattataagctgtgctgatgctgatgtaactcattctgaactgcatttgcctccag
- - - - - - - - - - - - - - - - - - - - - GAGGAG