1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAGgtacgtccgtacgtgtacctatgaatttaacatattggattccaagtagcaattacactgtttaagcatggttgcatagttcaaggaaacaggatcgcat...
species | Zea mays |
transcript | GRMZM2G391936_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAG GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTCEST: gi|211232745|gb|FL322840.1|FL322840
genomic: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAGgtacgtccgt ... gacatttcagGCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
EST: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAG GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTCEST: gi|71429962|gb|DR811012.1|DR811012
genomic: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAGgtacgtccgt ... gacatttcagGCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
EST: AAAGAAATCGATGTAAAG GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTCEST: gi|31362917|gb|CD447274.1|CD447274
genomic: AAAGAAATCGATGTAAAGgtacgtccgt ... gacatttcagGCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
EST: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAG GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTCEST: gi|78103575|gb|DV522003.1|DV522003
genomic: ATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAGgtacgtccgt ... gacatttcagGCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
EST: TTCAGCAAAAGAAATCGATGTAAAG GCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
genomic: TTCAGCAAAAGAAATCGATGTAAAGgtacgtccgt ... gacatttcagGCTTATCTTTTCAATGATTACTGGGAAGATATTGGAACTATTAAGTCCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGCGTTTTCCCACTGCAAATGATTTTGGTTCTGAAATAATTCCTGCTTCAGCAAAAGAAATCGATGTAAAGgtacgtccgtacgtgtacctatgaatttaacatattggattccaagtagcaattacactgtttaagcatggttgcatagttcaaggaaacaggatcgcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA