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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcctgatcatgtaacaaatcaagcctttctagtatgcctgttcagatgctaaggagcattattttctgtgccag

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g15490.1 (Oryza sativa), 5'ss of exon 5
GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcctgatcatgtaa-caaatcaag----cctttctagtatgcc--tgttcagatgctaaggagcattat-tttctgtgccag
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || ||||| |||||||||||||||| |||||||||||||||   ||||||      | | ||||| |||   | ||||  ||||||||| || |||  |||||   |||
GTTGGTCAAGAGCAGTTCTCGCCTAGTTCACCTGGCTGGCCTCCTTTCATGAGGGTCAATCCTATATTGGACTGGTCATACAGgttttcctcctgatcatgtaaatcaatcaaaaggtgcctcctagtctgctaatattcatgtgctaaggaacactatacttctgcctcag

upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA19G36860.1 (Glycine max), 5'ss of exon 6
GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgttt--ttctcctgatcatgtaa---caaatcaagcctttctagtatgcctgttcaga-----tgctaaggagcattattttctgtgccag---------
|||||||||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||  ||||  |    ||| |    |   |  |  ||||  | || |     | |||     |||| |       |  |||   |   |          
GTTGGTCAAGAACAATTCTCCCCTAGTTCGCCTGGGTGGCCACCTTTCATGAGGGTGAATCCCATTTTAGATTGGTCATACAGgtttgattctttttgctatgcagtttcttcttcatgctttaaattaagtaaaattagaaccagtgcttatatttggtggttttcttttaaactcttatct

upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA03G34140.1 (Glycine max), 5'ss of exon 5
GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcctgatcatgtaacaaatcaagcctttctagtatgcctgttcagatgctaaggagca-ttattttctgtgccag------------------
|||||||||||||| ||||| |||||||||||||| ||||| ||||| |||||| ||||||| || || ||||||||||||||||||   || |  |  | |      ||      ||    |        | | ||   ||  ||   |||| ||  ||||                     
GTTGGTCAAGAACAATTCTCCCCTAGTTCACCTGGGTGGCCACCTTTCATGAGGCTGAATCCCATTTTAGATTGGTCATACAGgtttgattctttgttctatgctgtttctttttcttgcttttaattaaataaaattaaaaccagtgcttatatttggtgcttttcttttaaactcttatct

upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
lower sequence: AT5G03430.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcctgatcatgtaacaaatcaagcctttctagtatgcctgttcagatgctaaggagcattattttctg---tgccag--------------------
||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||     |||   | || |||    |||  |  | |  ||||| | ||  ||       |||| || ||   |||  |                    
GTTGGTCAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCTCCCTTTATGAGGGTGAATCCTATATTGGATTGGTCCTACAGgtttctctttc--tcagtaatcatatc--ttcttattgctttatctgttaaaatcttattattacttatgttttggtatgcgtgacgtgcagaaaattttgagc

upper sequence: GRMZM2G381933_T03 (Zea mays), 5'ss of exon 5
lower sequence: Vv08s0007g04980.t01 (Vitis vinifera), 5'ss of exon 6
GTTGGTCAAGAACAGTTCTCTCCTAGTTCACCTGGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtt----------tttctcctgat-catgtaacaaatcaagcctttctagtatgc------ctgttcagatgctaaggagcattattttctgtgccag---
|| ||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| ||||||||           || | || |   || || ||||  |   |||  ||| |         ||||      || |||  ||||  ||   ||    ||   
GTAGGTCAAGAACAATTCTCTCCTAGTTCACCTGGATGGCCACCTTTTATGAGAGTGAACCCAATCTTGGATTGGTCTTACAGgttataaaggctgcttatactaacatatatatcaaactagttcttcttagcaaatgaaaggctgtctgagagcaaagttgcat-gttggttgcctaagaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33770862|gb|CF273156.1|CF273156
EST:     GGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAG                         GGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA
genomic: GGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcc ... tctgtgccagGGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA
EST: gi|31353159|gb|CD437516.1|CD437516
EST:     GGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAG                         GGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA
genomic: GGCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGTCATACAGgtttttctcc ... tctgtgccagGGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA
EST: gi|32932020|gb|CF036832.1|CF036832
EST:     GCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATTGGGTCATACAG                         GGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA
genomic: GCTGGCCTCCTTTTATGAGGGTGAATCCAATCTTGGATT-GGTCATACAGgtttttctcc ... tctgtgccagGGATGTTTGGTCTTTTCTAATAACATGTAAGGTCAAATACTGCAGCCTTTA