Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCGACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcatatcaattattagctaatttggtagctgcagcttcactattattgctccaaaaggccagtgttgaccatcttcctttctttttgtaacag

Basic information

species Zea mays
transcript GRMZM2G366935_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G366935_T07 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g40840.2 (Oryza sativa), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCGACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcatatcaattattagctaatttggtagctgcagcttca--ctattattgctccaaaaggccagtgttgaccatctt--cctttctttttgtaacag---
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||| ||| | |||| ||||||||| | |||| || | ||||| ||| | || ||||||||||| ||||||||| | | |
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCAACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgtga----ttgtttgattctgcatatcaattcttaacaaattcggtagctgctgattcattcttctgttgctgaaaaggagcatgcttgaccatcttttcctttctttcttctaaaatag

upper sequence: GRMZM2G366935_T07 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA06G08480.2 (Glycine max), 5'ss of exon 5
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCGACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttga-ttctgcatatcaattattagctaatttggtagctgcagcttcactattattgctccaaaaggccagtgttgaccatcttcctttctttttgta-acag---------------------------------------------------------
|| |||||||| | |||||||||||||||||||| |||| | || ||||||||||| ||||| ||||| |||||||| || || |||||||||||||||||| ||| ||||| | | ||| | ||| | || | | | || |||| || | ||| ||| ||| || ||| |||| | | | |||
GGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtctgtggattattcttggccttcagtttatttctcatgtttcattcttaagtctcttgctt-acaa--attaaaccatggctttttccttggcctgctttctttgtccagggatgcagtgtatcttggttgtgtctgcttactttaacttctttcttgttctttatcatattcag

upper sequence: GRMZM2G366935_T07 (Zea mays), 5'ss of exon 5
lower sequence: Vv04s0008g04220.t01 (Vitis vinifera), 5'ss of exon 6
GGGCCAAGCTTGTATGATTTTCTAAAGAGAAATAGATACCGACCTTTCCCTGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagttattgcttgattctgcat-atcaattattagctaatttggtagctg---cagct--tcactattattgctccaaaaggccagtgttgaccatcttc--ctttctttttgtaacag------------------------------------------------------
|| ||||| || | |||||||||||||||||||| |||| | || || |||||||| ||||| ||||| |||||||| || || |||||||||||||||||||||| || | | | ||| | ||| | ||| || ||| | || | | | || || | |||| || ||| || || | | |||| |
GGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTTCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATgtgtgtgcattgtccttggcccttgctttatctctcattctgtattttattttctaacctaaccaattacccagatctgttttttgggcctgttttgtttgtccaggactgtacctctgtattatgtttgtgtcctttttgttttaacatgattttccttgctttacaatatccaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148983054|gb|EE028963.2|EE028963
EST:     TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCAT                         ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
genomic: TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagt ... tttgtaacagATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
EST: gi|93015243|gb|EB640763.1|EB640763
EST:     TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCAT                         ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
genomic: TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagt ... tttgtaacagATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCAGAAAACATAC
EST: gi|149000442|gb|EE037616.2|EE037616
EST:     TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCAT                         ATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCCCAGAAA-CATA
genomic: TGTGGAACTTGTGCGGGAGTTTGGACGGCAACTGTTGGAATCTGTAGCATgtgtgttagt ... tttgtaacagATATGCATGACTTGAGGCTTATCCACACTGATCTGAAGCC-AGAAAACATA