Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag

Basic information

species Zea mays
transcript GRMZM2G362088_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os03g05740.1 (Oryza sativa), 5'ss of exon 4
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgta---atttggtgctgagatcagtacttattttggatacctaat--tgggatact-ttgccgcac-gtacccacaggatttctgatagtattct--ttgcacatttgatccatctttct--ttg--caagcaca---acagcacatgcatgtt-tttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
|||||||| || ||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||| ||||| |||||||||||   ||   |  ||  | |     ||| ||           ||  ||| || || |||  |||    |  ||  || ||| ||| |   ||||  | | |  | | |   || |||    |||  | | |  |    |  ||||||||| |  |||  || ||||||||         ||||  | |  | |||||| ||
GTAACTGTCGGTGCATCATTTTTATCACAAACATTGGCTTTGGAGGACTCAACAATAGTGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGgtacacatacagcactatggttttagcttcttccaatcttgggataatggcatgctgttggtgcattagaagcattggttttgtgagaaagttctagtagtatgtgttactgatttttacaattgatccatcttacgtgccacacatgcatatggtttttctcaatcaagaactc-----attggta-ccagccaattttag

upper sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 4
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
||||||||||| || |||||||| ||||||||| | ||  || | || || |||| ||| ||||||||||| |||||||||||||| |||||||||| | |      |    |      ||| |    ||   |  |    |   ||       |      | | ||||| ||| | ||   ||||     |   ||  | ||||                                                                           
GTAACTGTTGGAGCTTCTTTTTTGTCACAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGgtgactctcatttatctttccagattaatcataatctattgtacaaaccattcttttttcaacaaaaaatgatttttga-aataaaatttgtttgctaattctctatttcag-------------------------------------------------------------------------

upper sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 4
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattggg-atactttgccgcacgtacccacagg-atttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
||||||||||| || |||||||| || |||||| | ||  || | || || |||| ||| ||||||||||| |||||||||||||| |||||||||| | | |    |   |||  | |  ||| || ||| |  ||||   | ||  | |       | | |||    ||| |   | |    ||||     |  |   |||| | |  |                                                                       
GTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGgtgact-gtcattt--atctttccagattatgcataacctattgtacaaaccattcttatttcaacaacaaatgttttttgaaatgaaatttgtttgct--aattatctgtttcag-----------------------------------------------------------------------

upper sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 4
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
|| ||||| || || || || || ||||||||| | || ||| | ||||| || | ||| ||||||||||| ||||| |||||||| |||||||||||  |   ||   |   || |  || |  ||   |||||  ||    ||||| |   |   |     |  |  ||   |  || ||||      | |  |  |       | |    | |       |||| |      |   |||   || | |   ||| ||    |  |  |     ||||
GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCTACGACAGTTAAGTTTGAAATATGGGACACTGCTGGTCAAGAGAGgta--tcattggccaacccattttttttcctgttcacctatctg----acttt-ctaaattcaatagaaataactcaacttatagtcttcttgagtctattgaaatggatctagagctctctctcttccatgaaaacccat--ttgag--aaaattacagaggat---aacttcatt--cctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50330001|gb|CO525127.1|CO525127
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329193|gb|FL235162.1|FL235162
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211392787|gb|FL282754.1|FL282754
EST:     TTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: TTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331350|gb|FL235175.1|FL235175
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAA
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAA
EST: gi|211329203|gb|FL235172.1|FL235172
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|60358607|gb|DN225580.1|DN225580
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|60341032|gb|DN208005.1|DN208005
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|37401257|gb|CF637991.1|CF637991
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331353|gb|FL235178.1|FL235178
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329194|gb|FL235163.1|FL235163
EST:     GATTCAACAATAGTGAAGTTTGANATTTGGGATACTGCTGGGCAAGAKAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGC
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGC
EST: gi|60347047|gb|DN214020.1|DN214020
EST:     ATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: ATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|32854499|gb|CD994180.1|CD994180
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|50330000|gb|CO525126.1|CO525126
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|74243754|gb|DT651668.1|DT651668
EST:     GAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331363|gb|FL235188.1|FL235188
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATT
EST: gi|12968444|gb|BG265390.1|BG265390
EST:     TAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTCTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: TAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|149074254|gb|EE162627.2|EE162627
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|149078434|gb|EE167210.2|EE167210
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|148970442|gb|EE021292.2|EE021292
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|148958503|gb|EC904742.2|EC904742
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|78091625|gb|DV519999.1|DV519999
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329196|gb|FL235165.1|FL235165
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|78084796|gb|DV513189.1|DV513189
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|40336982|gb|CK371052.1|CK371052
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|149094892|gb|EE180470.2|EE180470
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|5525847|gb|AI861740.1|AI861740
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCATTTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331355|gb|FL235180.1|FL235180
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCA
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCA
EST: gi|60336834|gb|DN203807.1|DN203807
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331359|gb|FL235184.1|FL235184
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTTACTACAGAGGAGCTGCTGCTGCAATTG
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTT-ACTACAGAGGAGCTGCTGCTGCAATTG
EST: gi|211331360|gb|FL235185.1|FL235185
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329201|gb|FL235170.1|FL235170
EST:     GATTCAACAATAGTGAAGTYTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|67021249|gb|CO449998.1|CO449998
EST:     CAACATTATTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: CAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331364|gb|FL235189.1|FL235189
EST:     GATTCAACAATAGTGAAGTTTGADATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTG
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTG
EST: gi|78021899|gb|DV490286.1|DV490286
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|110201225|gb|EC883122.1|EC883122
EST:     AATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: AATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329204|gb|FL235173.1|FL235173
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211331358|gb|FL235183.1|FL235183
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGGCGCCACTTTACTACA
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGG-CGCCACTTTACTACA
EST: gi|211329197|gb|FL235166.1|FL235166
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|60400505|gb|DN233312.1|DN233312
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|149014736|gb|EE044417.2|EE044417
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|211329200|gb|FL235169.1|FL235169
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: gi|13381875|gb|BG458550.1|BG458550
EST:     GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG                         GTATGCTGCCTTGGCGCCACTTTACTACANNNNNNNNNGCTGCTGCAATTG
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACA-GAGGAGCTGCTGCTGCAATTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA