1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
species | Zea mays |
transcript | GRMZM2G362088_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211329196|gb|FL235165.1|FL235165
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331350|gb|FL235175.1|FL235175
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAAEST: gi|211329203|gb|FL235172.1|FL235172
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAA
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331353|gb|FL235178.1|FL235178
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|50330001|gb|CO525127.1|CO525127
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211329194|gb|FL235163.1|FL235163
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGANATTTGGGATACTGCTGGGCAAGAKAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCEST: gi|148937431|gb|EC881612.2|EC881612
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGC
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331363|gb|FL235188.1|FL235188
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTEST: gi|5525847|gb|AI861740.1|AI861740
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCATTTGTEST: gi|211331355|gb|FL235180.1|FL235180
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAEST: gi|60336834|gb|DN203807.1|DN203807
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCA
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331359|gb|FL235184.1|FL235184
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTTACTACAGAGGAGCTGCTGCTGCAATTGEST: gi|211331360|gb|FL235185.1|FL235185
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTT-ACTACAGAGGAGCTGCTGCTGCAATTG
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211329201|gb|FL235170.1|FL235170
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTYTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331364|gb|FL235189.1|FL235189
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGADATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGEST: gi|78089132|gb|DV517518.1|DV517518
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTG
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211329204|gb|FL235173.1|FL235173
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211331358|gb|FL235183.1|FL235183
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGGCGCCACTTTACTACAEST: gi|211329197|gb|FL235166.1|FL235166
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGG-CGCCACTTTACTACA
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGTEST: gi|211329200|gb|FL235169.1|FL235169
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
EST: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAG GTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
genomic: GATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggt ... tcaatttcagGTATGCTGCCTTGGCGCCACTTTACTACAGAGGAGCTGCTGCTGCAATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAACTGTTGGCGCATCTTTTTTATCACAAACATTGGCATTGGAGGATTCAACAATAGTGAAGTTTGAAATTTGGGATACTGCTGGGCAAGAGAGgtaatttggtgctgagatcagtacttattttggatacctaattgggatactttgccgcacgtacccacaggatttctgatagtattctttgcacatttgatccatctttctttgcaagcacaacagcacatgcatgtttttgcctgaatcaagagtcatgagaattgagagcttgtcaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA