Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCTCTAACGTTCTATAAATTGAGTACATTTGAAGTTGATGTTTTGTATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacctttacacagtgttcatgttatagggttctgttgctagttgctataatgtgctaaaatctatgtag

Basic information

species Zea mays
transcript GRMZM2G361605_T02
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67023470|gb|CO452219.1|CO452219
EST:     ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACG                         ATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
genomic: ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
EST: gi|67041181|gb|CO467436.1|CO467436
EST:     TGTGGGTACAGGCGACTCGNCAA-TTCC-CAAAAGATA-GCACTTACACG                         ATTGGCCCTTTCC
genomic: TGTGGGTACAGGCGACTCG-CAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCC
EST: gi|211418421|gb|FL279572.1|FL279572
EST:     ATGTGSGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACG                         ATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA
genomic: ATGTGGGTACAGGCGACTCGCAAATTCCACAAAAGATAAGCACTTACACGgtaagcaacc ... atctatgtagATTGGCCCTTTCCAACCCTCCAAATGTGAGAAGACCAAGCTGAAAGTTAAA