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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAGCCATGTATGTTGCAAGAGAAGCAAGGACTCCCTTCTTCAGAGTTGGTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtatttagaatgtctcgatgtcatatacttctggttgcagcatggcaattgacaactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactag

Basic information

species Zea mays
transcript GRMZM2G359397_T03
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G359397_T03 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os01g67520.2 (Oryza sativa), 5'ss of exon 3
AATAGCCATGTATGTTGCAAGAGAAGCAAGGACTCCCTTCTTCAGAGTTGGTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtatttagaatgtctcgatgtcatatacttctggttgcagcatggcaattgacaactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactag
| | ||||||||||||||||| ||||||| |  ||| ||||||||||||||||| ||||| ||||| || || ||||||||||| || || |||||||||||| ||               |||||||| |||| |    |   | |  |  |  |   ||     | |  |||  |   || | ||| || ||               
ACTTGCCATGTATGTTGCAAGTGAAGCAAAGGATCCATTCTTCAGAGTTGGTTACAACAGTCTGGGTGGTTTCGCAACTATCAATCATCTCCACTTCCAGgttggtc--------------atgtcata-actttttcccgtgtcctaactctaaatttcttatgatgtcctgctgttgacacattaattcgtag--------------

upper sequence: GRMZM2G359397_T03 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G46230.1 (Glycine max), 5'ss of exon 5
AATAGCCATGTATGTTGCAAGAGAAGCAAGGACTCCCTTCTTCAGAGTTGGTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtatttagaatgtctcgatgtcatatacttctggttgcagcatggcaattga-caactgtctgtatattgcaatcctcaaagtaagtcatatatttcgttcactag
  | ||  |  |  | |||   |||||    | ||| |  ||  || | ||||| |||||| |||| |  ||||||||||||||||| ||||||||||||    ||| |  | ||  ||  ||    |||||  ||  | |   ||||   ||    |   ||| |  ||  | |||  || |  | || |     |||| |        
CCTTGCACTTCAGATGGCAGTGGAAGCCGATAATCCTTATTTTCGATTGGGTTACAACAGCTTGGGTGCTTTTGCAACTATCAACCATCTTCACTTCCAG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31353662|gb|CD438019.1|CD438019
EST:     GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG                         GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: gi|67017472|gb|CO446221.1|CO446221
EST:     GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG                         GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: gi|78119881|gb|DV538265.1|DV538265
EST:     GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG                         GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
EST: gi|78119880|gb|DV538264.1|DV538264
EST:     GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAG                         GCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG
genomic: GTTATAACAGCCTGGGCGGCTTTGCAACTATCAACCACCTTCACTTCCAGgttagtattt ... cgttcactagGCATACTACCTGAAAGTACAGTATCCAGTTGAAAAGGCAATCACGGAGAAG