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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag

Basic information

species Zea mays
transcript GRMZM2G358059_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os07g14270.3 (Oryza sativa), 5'ss of exon 5
CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||  ||| ||    |        ||| |     |  ||||||  | ||   | |||  || | ||   |   || | |||  ||    | ||   | | |                                                            
CCAGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCTGAGgtact-tttcctttgttctgacttccgatatatcttgtaaaaatgacta--acttcgtatcttgcat-gaatgaga---aacgggaaccttagc-tgacctgaattag-----------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA10G28890.1 (Glycine max), 5'ss of exon 5
CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag
|| || || ||||||||||| || || |||||||| |||||||| ||||| ||||||||| ||  || |||||    | |||   || ||||    ||  |||  ||  || |      | | | |||| ||| | | |   |  | |  ||||  | |                                                                 
CCAGAAGATTGGGATGACAAAGAATATATTCCTGATCCTGAGGATAAGAAACCAGAGgtaatgcctt-tttctaaaaggcct---ctcatgt----tatatga--acctttcagagtactatgtggtat-gtactgactcgtatgtcttgtatt-tgtag----------------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 5'ss of exon 5
CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag
||||| |  |||||||| || ||||| |||||||||||||| || ||||||||||||||||| ||   |    |||   | ||| || ||   |   |   ||    ||| | ||| ||| |  ||| |   |    ||   | || |  ||| | |                                                                   
CCTGAAGCTTGGGATGATAAAGAGTATATTCCTGACCCTGAAGATAAGAAGCCAGAGgtagttttccttcatctggaaacttaa-ctcataaattccaataga----aatatgagacctttt--tgtttg--accatataccacatcttgtatgaag-------------------------------------------------------------------

upper sequence: GRMZM2G358059_T01 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 5'ss of exon 5
CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatt-tcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag
||||| || |||||||| ||||||||||||||||| ||||| ||  |||||||||||||     ||  |  | || | ||| |  ||||              |  |  || ||| |  || | ||||| |  ||| | |||  ||  |    ||||                                                                    
CCTGAAGATTGGGATGAGAAGGAGTACATTCCTGATCCTGAAGATGAGAAGCCAGAGgtgacaattcctcattttagtgccttgtgcttg------------aagcaacatctaaaa--ttgttttgtaca--attaactgactaacatatatttacag------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148931875|gb|EC877339.2|EC877339
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33095282|gb|CF055276.1|CF055276
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|86467986|gb|DY234356.1|DY234356
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|149074502|gb|EE162898.2|EE162898
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|7162446|gb|AW520068.1|AW520068
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|71432523|gb|DR813573.1|DR813573
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCT
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCT
EST: gi|33093068|gb|CF053062.1|CF053062
EST:     ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33096251|gb|CF056245.1|CF056245
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|18180018|gb|BM381228.1|BM381228
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33100825|gb|CF060785.1|CF060785
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|149074540|gb|EE162939.2|EE162939
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|149074503|gb|EE162899.2|EE162899
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCCAAG-AAATTCCTGACCCTGATGC
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCC-AAGGAAATTCCTGACCCTGATGC
EST: gi|33093345|gb|CF053339.1|CF053339
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|86470502|gb|DY236872.1|DY236872
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33095007|gb|CF055001.1|CF055001
EST:     ACTGGGATGACAAGGAATACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|71442155|gb|DR823205.1|DR823205
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|32939080|gb|CF043899.1|CF043899
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|20811062|gb|BQ295540.1|BQ295540
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGG
EST: gi|32944681|gb|CF049500.1|CF049500
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|32846617|gb|CD986298.1|CD986298
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|148951386|gb|EC897102.2|EC897102
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAACCCAGAG                         GGCTATGATGAAATTCCCA
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCA
EST: gi|32944583|gb|CF049402.1|CF049402
EST:     GTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: GTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|148963937|gb|EE015058.2|EE015058
EST:     CTGGGATGACAAGGAGTACATTCCTGACCCTGAGGGACA-GAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAA-TTCCTGACCCTGATGCTAAGAAG
genomic: CTGGGATGACAAGGAGTACATTCCTGACCCTGAGG-ACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|6021565|gb|AW066493.1|AW066493
EST:     ACTGGGATGACAAGGAGGACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTAGGGGGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|5268655|gb|AI770619.1|AI770619
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33093443|gb|CF053437.1|CF053437
EST:     TACATTCCTGACCCTGAGGACGAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: TACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|148937046|gb|EC881219.2|EC881219
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|4647548|gb|AI622623.1|AI622623
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|32943144|gb|CF047963.1|CF047963
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGGCCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|32912239|gb|CF017051.1|CF017051
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|9956198|gb|BE643632.1|BE643632
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|32940367|gb|CF045186.1|CF045186
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|6012223|gb|AW061765.1|AW061765
EST:     ACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|33094313|gb|CF054307.1|CF054307
EST:     ACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|8383235|gb|BE056178.1|BE056178
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|7216518|gb|AW562640.1|AW562640
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|71759740|gb|DR957677.1|DR957677
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|148937047|gb|EC881220.2|EC881220
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAGGGAAATTCCTG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTG
EST: gi|7162466|gb|AW520088.1|AW520088
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
EST: gi|71442156|gb|DR823206.1|DR823206
EST:     ACTGGGATGACAAGGAGTACATTCCTGATCCTGAGGACAAGAAGCCAGAA                         GGCTATGATGATATTTCCAAGGAA
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAA
EST: gi|148963936|gb|EE015057.2|EE015057
EST:     ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAG                         GGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG
genomic: ACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1053

CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 672

CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 849

CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 2942

CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgtttt ... tattttccagGGCTATGATGATATTCCCAAGGAAATTCCTGACCCTGATGCTAAGAAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCTGAGGACTGGGATGACAAGGAGTACATTCCTGACCCTGAGGACAAGAAGCCAGAGgtagtgttttatttcttggcgccctaagcttatgtctcttacctgactacaatttaagagcttctattgtatagtatttaatgagaaatttgctattacgcaagtcactagtttccttaattttggtgaacagtacagctcattgcctttttcccattattttccag

- - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC