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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTTTACATTCTGACATTCTGGCTAGTGGAAGTTTGGATCATGAGGTTCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctctcagaggactccttgcatcctattcataaccaattctgagaaataagtaacttatattatatttgatgttcctctggtag

Basic information

species Zea mays
transcript GRMZM2G353548_T04
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g18820.1 (Oryza sativa), 5'ss of exon 6
CATCCTTTACATTCTGACATTCTGGCTAGTGGAAGTTTGGATCATGAGGTTCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctctcagaggactccttgcatcctattcataaccaattctgagaaataagtaacttatattatatttgatgttcctctggtag----
||||| |||| | |||| || || ||||| || ||||||||||| || || ||||| ||||| ||||| || ||||||||||||||||| || |||||||||||| | ||| ||  ||  |     |   | |      |||    ||| |  | | || || |  || |   ||||||||   |  | |    
CATCCATTACTTCCTGATATCCTTGCTAGCGGTAGTTTGGATCAGGAAGTCCGTCTTTGGGACGCTAAAACCTCAGACTGTATTGGATCTCAGGACTTCCgtaatatatctaagcagatcctaatgagtatgtctccttccatgggtgaaatctgaata-ctaaccttttcagtgatgttctcttatttgatag

upper sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 5
lower sequence: Vv05s0077g00140.t01 (Vitis vinifera), 5'ss of exon 5
CATCCTTTACATTCTGACATTCTGGCTAGTGGAAGTTTGGATCATGAGGTTCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctctcagaggactccttgcatcctatt-cataaccaattctgagaa-ataagtaacttatattatatttgatgttcctctggtag-----------------
|||||  |  || |||| || || || |||||||||||||||||||| |||||  |||||||||| | |||| |||| || || || ||||  |||||  |||||   |   |  |  ||| ||   |   ||| || |  ||||  |  |   | | |||   | |  | ||||||||       |  |                   
CATCCACTCTATCCTGAAATACTTGCAAGTGGAAGTTTGGATCATGAAGTTCGATTGTGGGATGCAAGTACTGCAGAGTGCATAGGGTCACGTGACTTTTgtaatgatttctatggacctctttttctaacatttcaaagacaatattacgctcagatgtatacttttgtgtatttgattgattgataatttccttttcctccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28873754|gb|CB329699.1|CB329699
EST:     TCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCC                         ATCGGCCAATTGCGTCCATTGCATTTCATGGAAGAGGAGAGATTCTGGCA
genomic: TCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctc ... cctctggtagATCGGCCAATTGCGTCCATTGCATTTCATGGAAGAGGAGAGATTCTGGCA
EST: gi|78106525|gb|DV524943.1|DV524943
EST:     TCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCC                         ATCGGCCAATTGCGTCCATTGCATTTCATGGAAGAGGAGAGATTCTGGCA
genomic: TCGTCTGTGGGATGCTAATACTTCAGACTGTATTGGATCACAAGACTTCCgtaatttctc ... cctctggtagATCGGCCAATTGCGTCCATTGCATTTCATGGAAGAGGAGAGATTCTGGCA