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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag

Basic information

species Zea mays
transcript GRMZM2G352837_T02
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA02G39360.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttg--tcgacttcagttattttcagat--atcttttttttaatgttt-tgcccattaacaacttccttggacag
||||| || || |||||||| ||||| |||| |||||| ||||| |||| ||| ||||||||||||||  || | | |     |     |||  ||||   ||||  | ||| | |  || |  || |   ||  |   
CATTATTCCGAATTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCACAGgtttgaatcaagtgctaaagtgactggatctatctaaatttttttatttattcttatcatgaaatgattttcag--

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag----------------
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || |  ||||   || | | | || |||  || |||   ||   || ||| || | ||                 
CATTACACAGAGTTGCCAGATATAAAACGTGTGATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgatccattgcttttataatttatctattgtaacattatgctagtttttaaattc-ttagtcattgttcaattcttgcag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 17
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag----------------
|||||| |||||||||| ||||| || ||||  ||||||||||| ||||  ||||| ||||||||||||    | || |  ||||   || | | | || |||  |  |||   ||   ||  | ||| | ||                 
CATTACACAGAGTTGCCAGATATAAAACGTGTAATTGTAAATACACATGCAATTGAGCCACAGgtttgtgtgttccattgcttttataatttatctattgtaacatcatgctagttt-taaaatacttagtcattgttcggttcttgcag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattt---tcagatatcttttttttaat--gttttgcccattaacaacttccttggacag--------
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  || |    | | | |   | |  | |||  |||||      | || |  |  ||     |        
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattccaactactcaaatgacacaatctatcgtaaatttgttttatattcttactatatgattatgatgtatttcag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 16
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttttttaatgttttgcccattaacaacttccttggacag-------
||||| || ||||||||||| ||||| |||| |||||| ||||| |||| ||| ||||| ||||||||   | ||||  |  |        |   | | |  |    |||    |||      || |   |          
CATTATTCCGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATCGAACCGCAGgtttg--aatttcaagtgctaaagtgactggatctatctaaaaattgttatttattcttatcatgaaatgattttcag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttca-gatatcttttttttaatgttt-tgcccattaacaacttccttggacag---------------------
|||||  | ||||||||||| ||||| |||| |||||| ||||| |||| |||||| ||||||||||   || | ||  |  |   | || |   | || |  || | | |    ||  | |   |  |   |||                      
CATTATACTGAGTTGCCTGACATCAAACGTGTCATTGTGAATACACATGCCATTGAGCCACAGgttt--tgattgcaactgctcaaatgacaatctattatatatatatatatatatatatattgtattcttacaatatgattataatgtatttcag

upper sequence: GRMZM2G352837_T01 (Zea mays), 5'ss of exon 5
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 18
CATTACTCAGAGTTGCCTGATATCAAGCGTGCCATTGTAAATACCCATGTCATTGAACCACAGgtttgtcgacttcagttattttcagatatcttttt-tttaatgttttgcccattaacaacttccttggacag--------
|||||||||||||| ||||||||||| ||||  ||||| || || ||||  ||||| |||||||| |  |  ||  | | ||| |  | |          |  |||||        | |  |   |  |   ||         
CATTACTCAGAGTTACCTGATATCAAACGTGTAATTGTGAACACACATGCTATTGAGCCACAGgtattacctctgaactaattgttggttgctaaacaactcgatgttcaagttgctgaatatccctctactcaaatttgcag