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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGGgtaagttttcttgctgatttaattcttacgttgccgcttattttgatatatcctccattgaaaatacagagttgaaagcagatcatactgctgcacttgt...

Basic information

species Zea mays
transcript GRMZM2G344279_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g13690.1 (Oryza sativa), 5'ss of exon 5
ATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGGgtaagttttcttgctgatttaat-tcttacgttgccgcttattttgatatatcctccattgaaaatacagagttgaaagcagatcatactgctgcacttgt
||||||||||| || |||||||| || |||||||| || ||| ||||||| ||||||||||| ||||||| |||||||||||| ||| ||    | |  |  | |  |   |      |||  |      ||  |   |||    |||||| ||| || |    |||        |    |
ATCTTCAATGGTGTCTTCCTCAAGGTTAACAAGGCAACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGGgtatgttatcaattttagctgctgttctgtttatatatttagctgtgctaattattgcttgctgttacagacttgtaatcct-ccatcgcaaattatcaat

upper sequence: GRMZM2G344279_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os04g51630.3 (Oryza sativa), 5'ss of exon 4
ATCTTCAATGGCGTGTTCCTCAAAGTCAACAAGGCGACTATTGACATGCTACGCAGGGTTGATCCATATGATGCATATGGgtaagttttcttgctgatttaattcttacgttgccgcttattttgatatatcctccattgaaaatac--agagttgaaagcagatcatactgctgcacttgt--
||||| ||||| |||||| | || |||||||| || || ||| ||||||| ||||||||||| ||||||| |||||||||||||| |  | |    |||  ||||   | |      |||| |  ||  | | ||     |   ||    || ||   | | | |  |  | ||  |  |||  
ATCTTTAATGGAGTGTTCTTGAAGGTCAACAAAGCCACCATTAACATGCTGCGCAGGGTTGAGCCATATGTTGCATATGGgtaagctaccata---attacattcgagcctaatatattatatatatgcaccatcttgctattttattttgaattaccatctg-ttgttttactagaaatgtga