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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAGgtcatctctccctcctgaccatgtgctcctgtctggggctttgtgcatccacacaagcacatacaagatcacattaacactccactctacatgtatttattatatgtttcag

Basic information

species Zea mays
transcript GRMZM2G342386_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os08g28190.1 (Oryza sativa), 5'ss of exon 5
ATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAGgtcatctctccctc---ctgaccatgtgctcctgtctg-----gggc-----tttgtgcatccacacaagcacatacaagatcacattaacactccactctacatgtatt----tattatatgtttcag
|| ||||||||||| |||||||| |||||||||||||| ||||||||| ||||||| |||||||| || ||||||||||||  |||||| |||   ||  || |   | ||| || |      | |     | || || | |||||   || | |||| ||   | |    ||   ||  |||||||||    |  |||   || |||
ATTGAGACAATGTTTGAGAAATACAACTTTGCTGGGGTATTCATCCAGGTCCAAGCTGTTCTTTCGCTATATGCTCAAGgtactctctctctctctctccccttccccccctctcagtatacagacacatgtatgagcttgcacacctacaaacacaaaat-gtactggttcttttcttaacatgtattatgtttgtatcctttccag

upper sequence: GRMZM2G342386_T02 (Zea mays), 5'ss of exon 5
lower sequence: Vv14s0068g01630.t01 (Vitis vinifera), 5'ss of exon 5
ATCGAGACAATGTTCGAGAAATATAACTTTGCTGGGGTCTTCATCCAGATCCAAGCAGTTCTTTCACTGTATGCTCAAGgtcatctctccctcctgaccatgtgctcctgtctggggctttgtgcatccacacaagcacatacaagatcacattaacactccactctacatgtatttattatatgtttcag
 | ||||| ||||| |||||||| ||||||||||| || ||||| || |||||||| ||| |  || ||||||||||||||    | |          || |  |    ||       ||  |   | | |||||  |   ||| |      |||  |   |||| || | || | ||||  |        
GTTGAGACCATGTTTGAGAAATACAACTTTGCTGGTGTGTTCATTCAAATCCAAGCTGTTTTAACATTGTATGCTCAAGgt-gcttataaagaagattcaaggtcaaaagttcaaaatttcat---ttctcacaaatat-cacatggatcttttactaaggcactataaaagt-tctatttgaaa------