1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCTGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaataaacaagctagccgccgcatgcatgtgtccccgtgccgtgcagtgtcgcacgtacgtacggccggcctagacgatgacctttgttcgtccaatgtgtgtggtgtggtgtggtgcgtgcag
species | Zea mays |
transcript | GRMZM2G340224_T02 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|21330641|gb|BQ486022.1|BQ486022
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|7304607|gb|AW600546.1|AW600546
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|86466802|gb|DY233172.1|DY233172
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|21480881|gb|BQ577564.1|BQ577564
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|21390432|gb|BQ528481.1|BQ528481
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAEST: gi|87154477|gb|DY399266.1|DY399266
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGA
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|71765068|gb|DR963005.1|DR963005
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|21330105|gb|BQ485486.1|BQ485486
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|21390265|gb|BQ528314.1|BQ528314
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGACEST: gi|12046168|gb|BF728307.1|BF728307
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTCGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGATEST: gi|7216885|gb|AW563007.1|AW563007
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
EST: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAAC GACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
genomic: TGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaat ... gtgcgtgcagGACGGGCGGATCAACTACACCGAGTTCGCGGCGATGATGAGGAAAGGAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACATCACGATGGAAGAGCTGGAGCAAGCCCTGAGGGAGAAGGGCCTGCTGGACGGCCGAGACATCAAGGAGATCGTGGCGGAAGTGGACGCCGACAACgtacgtaaataaacaagctagccgccgcatgcatgtgtccccgtgccgtgcagtgtcgcacgtacgtacggccggcctagacgatgacctttgttcgtccaatgtgtgtggtgtggtgtggtgcgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA