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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGTGCATGTACCGCCGTCCATTACCCTTGCTACGAGAGGCCGGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaatacattccattcgactcatttgatggtttatagtgtttcctgaaaacttagtgccatggaaattttttgtttcag

Basic information

species Zea mays
transcript GRMZM2G337425_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G337425_T03 (Zea mays), 5'ss of exon 4
lower sequence: AT3G55530.1 (Arabidopsis thaliana), 5'ss of exon 5
CGTGTGCATGTACCGCCGTCCATTACCCTTGCTACGAGAGGCCGGTTACAGAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgt--gtgcca---atacattccattcgactcatttgatggtttatagtgtttcctgaaaacttagtgcc----atggaaatt-ttttgtttcag---
 |  ||||||| || || |||||| | |||||||||||||| ||  | ||| | ||||| || || ||||||||||||||||| |||||||| || ||||||  ||  ||        |||| ||  | |  | |   | ||  |||| |    |  |   ||   | |    |   || || || || | ||    
AGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGGCGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGgtcagtatcatccgcttgttcctttttattagtctatagtttagtagtttgctttctatggttgaagtctgagacaaaagttgttctgctgcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109926|gb|DV528341.1|DV528341
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|50332883|gb|CO528009.1|CO528009
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|148931116|gb|EC873780.2|EC873780
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|78083979|gb|DV512372.1|DV512372
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|18164717|gb|BM334556.1|BM334556
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|91048354|gb|EB158772.1|EB158772
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|91876517|gb|EB406474.1|EB406474
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAG
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAG
EST: gi|76288198|gb|DV027766.1|DV027766
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|18166650|gb|BM336489.1|BM336489
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
EST: gi|78085073|gb|DV513466.1|DV513466
EST:     GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAG                         ATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT
genomic: GAGCCTTAGACTTCAACTGGCTCTTCTTGATCGTGAATTTGACGATTTAGgtgtgccaat ... tttgtttcagATTATGACACTCTGAGAGCATTGGATGCTGACAATAGCCCACATGCTCCAT