1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GTTTCTCTCAGATAACCAACTAACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattcctaattctcttatctttttcctccgaaacgacaagaccatactattgttttctactttcatcagttaatcgactcaagagtcaagatcctcttttaccag
species | Zea mays |
transcript | GRMZM2G335638_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CATTCCAATGTCATTATCAGAACTCCATAGTCT-ACAGCNCAT GTCNCTGAATGATANCCATCTAGATGGAAAGCTACCAGATGCATTTGATTEST: gi|16746060|gb|BM032490.1|BM032490
genomic: CATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGC-CATgtaattccta ... cttttaccagGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATT
EST: CTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCAT GTCACTGAATGATACCCATCTAGATGGAAAGCTACCAGATGCATTTGATTCEST: gi|18384548|gb|BM417747.1|BM417747
genomic: CTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattccta ... cttttaccagGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTC
EST: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCAT GTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTCEST: gi|18384557|gb|BM417756.1|BM417756
genomic: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattccta ... cttttaccagGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTC
EST: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCAT GTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTCEST: gi|18384652|gb|BM417851.1|BM417851
genomic: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattccta ... cttttaccagGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTC
EST: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCAT GTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTC
genomic: ACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattccta ... cttttaccagGTCACTGAATGATAACCATCTAGATGGAAAGCTACCAGATGCATTTGATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCTCTCAGATAACCAACTAACTGGAAGCATTCCAATGTCATTATCAGAACTCCATAGTCTAACAGCCATgtaattcctaattctcttatctttttcctccgaaacgacaagaccatactattgttttctactttcatcagttaatcgactcaagagtcaagatcctcttttaccag
- - - - - - - - - - - - TGGAAG