1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CAAAGTAGCCTTGGTAACAACAATAAGAGGGTTGAGCTCTTTGATATGGGTGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattagtttctaacttcatcacaaactcacaattgataatcgtatattggtctgtaaaacttcaagcatgtcaaaggtctcagagcgtacaatcat...
species | Zea mays |
transcript | GRMZM2G330650_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|60396385|gb|DN229254.1|DN229254
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: GAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|32866170|gb|CF005852.1|CF005852
genomic: GAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATGCGGGAAGGAACCAAATGGACCAAAEST: gi|50338100|gb|CO533226.1|CO533226
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: GCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|60396054|gb|DN228924.1|DN228924
genomic: GCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|78122353|gb|DV540737.1|DV540737
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|211141939|gb|FL417378.1|FL417378
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: ATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|211019324|gb|FL371811.1|FL371811
genomic: ATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|7135269|gb|AW498001.1|AW498001
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|211320442|gb|FL345947.1|FL345947
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAAEST: gi|78122352|gb|DV540736.1|DV540736
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|32827094|gb|CD966772.1|CD966772
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATGCGGGAAGGAACCAAATGGACCAAAEST: gi|60337886|gb|DN204859.1|DN204859
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|148961350|gb|EE012080.2|EE012080
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAAEST: gi|76019098|gb|DT946268.1|DT946268
genomic: TGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
EST: AGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAG CCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
genomic: AGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattag ... aacattgcagCCATGACAAATCAACAACTCATTGATACGGGAAGGAACCAAATGGACCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGTAGCCTTGGTAACAACAATAAGAGGGTTGAGCTCTTTGATATGGGTGCTGGAAGTAGTGAGCCTGCTGCTGAGGACAATATTCAAATGGCATCAGgtgaaattagtttctaacttcatcacaaactcacaattgataatcgtatattggtctgtaaaacttcaagcatgtcaaaggtctcagagcgtacaatcat
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT