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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCATCCAGGGCATCCCGATGGTGCAAGTCAGCGACTCCTACTTCTGGTTCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAGgttaatgcgctctctatctagctacctgcctgctgcttaatttgtctttaattatattaattgtgctcagtcagtctcatgtctctgtctctgtctctgtctctcccag

Basic information

species Zea mays
transcript GRMZM2G325653_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G325653_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os05g09050.1 (Oryza sativa), 5'ss of exon 7
CGTCATCCAGGGCATCCCGATGGTGCAAGTCAGCGACTCCTACTTCTGGTTCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAGgttaatg---------cgctctctatctagctacctgcctgc-tgcttaatttgtcttta---attatattaatt-gtgctcagtca-gtctcatgtct--ctgtctctgtctct-gtctctcccag
 || |||||||| || ||| ||||||| ||||||||||||||||||||||||   || || |||||||| |||||||||||||| ||||||||||||||||||  |          |  | | | |||  | |     || | ||  | | |||||   |   |  ||   |||| ||| | |   |   || |  | |   ||  |||   ||| || |  | |||
GGTGATCCAGGGGATACCGCTGGTGCAGGTCAGCGACTCCTACTTCTGGTTCAGCCGACCAACCTTCGTCCTCTTCCTCATCCATTTCACCCTCTTCCAGgttggtctcaatcaatcattttttctctctccattgatctccatgaattaattgtcaccatccaccattgcaattagtgataaactatacctgacctttgattgattcttcttcttgttttgcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8318749|gb|BE025314.1|BE025314
EST:     TCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAG                         AATGGCTTCCAGATCATCTACTTCCTCTGGATTCTG
genomic: TCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAGgttaatgcgc ... tctctcccagAATGGCTTCCAGATCATCTACTTCCTCTGGATTCTG
EST: gi|78179418|gb|DV549791.1|DV549791
EST:     TCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAG                         AATGGCTTCCAGATCATCTACTTCCTCTGGATTCTG
genomic: TCGCACGCCCCACCTTCGTGCTCTTCCTCATCCACTTCACCCTCTTCCAGgttaatgcgc ... tctctcccagAATGGCTTCCAGATCATCTACTTCCTCTGGATTCTG